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AT3G63270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.521
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: PIF / Ping-Pong family of plant transposases (TAIR:AT3G55350.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG411206YeggNOG:KOG4585EMBL:AF370300EMBL:AY063087EMBL:CP002686EnsemblPlants:AT3G63270EnsemblPlants:AT3G63270.1
entrez:825502GeneID:825502GO:GO:0003682GO:GO:0005634GO:GO:0031936Gramene:AT3G63270.1hmmpanther:PTHR22930
hmmpanther:PTHR22930:SF26HOGENOM:HOG000070719InterPro:IPR027806KEGG:ath:AT3G63270OMA:LDTEWWYPfam:PF13359PhylomeDB:Q94K49
Proteomes:UP000006548RefSeq:NP_567144.1STRING:3702.AT3G63270.1TAIR:AT3G63270UniGene:At.1305UniProt:Q94K49
Coordinates (TAIR10) chr3:-:23375932..23377398
Molecular Weight (calculated) 44974.00 Da
IEP (calculated) 8.21
GRAVY (calculated) -0.38
Length 396 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPVKQKKKN KKKPLDKAKK LAKNKEKKRV NAVPLDPEAI DCDWWDTFWL RNSSPSVPSD EDYAFKHFFR ASKTTFSYIC SLVREDLISR PPSGLINIEG
101: RLLSVEKQVA IALRRLASGD SQVSVGAAFG VGQSTVSQVT WRFIEALEER AKHHLRWPDS DRIEEIKSKF EEMYGLPNCC GAIDTTHIIM TLPAVQASDD
201: WCDQEKNYSM FLQGVFDHEM RFLNMVTGWP GGMTVSKLLK FSGFFKLCEN AQILDGNPKT LSQGAQIREY VVGGISYPLL PWLITPHDSD HPSDSMVAFN
301: ERHEKVRSVA ATAFQQLKGS WRILSKVMWR PDRRKLPSII LVCCLLHNII IDCGDYLQED VPLSGHHDSG YADRYCKQTE PLGSELRGCL TEHLLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)