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AT3G63140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22274653 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19288221 (2010): plastid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chloroplast stem-loop binding protein of 41 kDa
Curator
Summary (TAIR10)
Encodes a protein with ribonuclease activity that is involved in plastid rRNA maturation.
Computational
Description (TAIR10)
chloroplast stem-loop binding protein of 41 kDa (CSP41A); FUNCTIONS IN: mRNA binding, poly(U) RNA binding; INVOLVED IN: rRNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: chloroplast RNA binding (TAIR:AT1G09340.1); Has 1047 Blast hits to 1047 proteins in 372 species: Archae - 70; Bacteria - 649; Metazoa - 6; Fungi - 5; Plants - 106; Viruses - 0; Other Eukaryotes - 211 (source: NCBI BLink).
Protein Annotations
BioGrid:10803eggNOG:ENOG410IEM4eggNOG:ENOG410ZXC4EMBL:AF428269EMBL:AL163816EMBL:AY059887EMBL:AY128804
EMBL:CP002686EnsemblPlants:AT3G63140EnsemblPlants:AT3G63140.1entrez:825489Gene3D:3.40.50.720GeneID:825489Genevisible:Q9LYA9
GO:GO:0003824GO:GO:0005840GO:GO:0006364GO:GO:0007623GO:GO:0008266GO:GO:0009507GO:GO:0009534
GO:GO:0009570GO:GO:0009579GO:GO:0009658GO:GO:0009735GO:GO:0009941GO:GO:0010287GO:GO:0010319
GO:GO:0019843GO:GO:0032544GO:GO:0045727GO:GO:0045893GO:GO:0048046GO:GO:0050662Gramene:AT3G63140.1
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF278HOGENOM:HOG000232785InParanoid:Q9LYA9InterPro:IPR001509InterPro:IPR016040iPTMnet:Q9LYA9
KEGG:ath:AT3G63140OMA:GWESKTNPaxDb:Q9LYA9Pfam:PF01370Pfam:Q9LYA9PhylomeDB:Q9LYA9PIR:T48103
PRIDE:Q9LYA9PRO:PR:Q9LYA9ProteinModelPortal:Q9LYA9Proteomes:UP000006548RefSeq:NP_191873.1SMR:Q9LYA9STRING:3702.AT3G63140.1
SUPFAM:SSF51735TAIR:AT3G63140tair10-symbols:CSP41AUniGene:At.48804UniGene:At.5159UniProt:Q9LYA9
Coordinates (TAIR10) chr3:-:23327006..23328620
Molecular Weight (calculated) 43932.10 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.17
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MAALSSSSLF FSSKTTSPIS NLLIPPSLHR FSLPSSSSSF SSLSSSSSSS SSLLTFSLRT SRRLSPQKFT VKASSVGEKK NVLIVNTNSG GHAVIGFYFA
101: KELLSAGHAV TILTVGDESS EKMKKPPFNR FSEIVSGGGK TVWGNPANVA NVVGGETFDV VLDNNGKDLD TVRPVVDWAK SSGVKQFLFI SSAGIYKSTE
201: QPPHVEGDAV KADAGHVVVE KYLAETFGNW ASFRPQYMIG SGNNKDCEEW FFDRIVRDRA VPIPGSGLQL TNISHVRDLS SMLTSAVANP EAASGNIFNC
301: VSDRAVTLDG MAKLCAAAAG KTVEIVHYDP KAIGVDAKKA FLFRNMHFYA EPRAAKDLLG WESKTNLPED LKERFEEYVK IGRDKKEIKF ELDDKILEAL
401: KTPVAA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)