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AT3G63070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tudor/PWWP/MBT domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tudor/PWWP/MBT domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), PWWP (InterPro:IPR000313); BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT domain-containing protein (TAIR:AT2G48160.1); Has 1177 Blast hits to 1087 proteins in 165 species: Archae - 0; Bacteria - 37; Metazoa - 667; Fungi - 174; Plants - 161; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMJ0eggNOG:ENOG410ZHF6EMBL:AL163816EMBL:CP002686EnsemblPlants:AT3G63070EnsemblPlants:AT3G63070.1entrez:825482
GeneID:825482Genevisible:F4IZM8GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0006397GO:GO:0009908
Gramene:AT3G63070.1hmmpanther:PTHR12550hmmpanther:PTHR12550:SF5HOGENOM:HOG000176901InParanoid:F4IZM8InterPro:IPR000313InterPro:IPR006569
InterPro:IPR006903iPTMnet:F4IZM8KEGG:ath:AT3G63070OMA:KDLCEIAPaxDb:F4IZM8Pfam:F4IZM8Pfam:PF00855
Pfam:PF04818Pfscan:PS50812Pfscan:PS51391PIR:T48096PRIDE:F4IZM8PRO:PR:F4IZM8PROSITE:PS50812
PROSITE:PS51391ProteinModelPortal:F4IZM8Proteomes:UP000006548RefSeq:NP_191866.3SMART:SM00293SMART:SM00582SMR:F4IZM8
STRING:3702.AT3G63070.1SUPFAM:SSF63748TAIR:AT3G63070UniGene:At.34000UniProt:F4IZM8
Coordinates (TAIR10) chr3:+:23302667..23309575
Molecular Weight (calculated) 149326.00 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.84
Length 1347 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAPSRKRGGG RAAAASSARR EWKVGDLVLA KVKGFPAWPA VVDEPEKWGH SADSKKVTVH FFGTQQIAFC NHGDVESFTE EKKQSLLTRR HAKGSDFVRA
0101: VKEITESYEK LKQQDQASGP KYAEETTAGS SGNTSQLPQA CENLIGSRLD TQIESSSSHG RDELTLLSED ASAAEQMLAL RHNTLAHNGA CDSAAAKDLC
0201: EIATYSSRRR NERVRALKYA PQSIILPVEH SKISSRLELD RVQRSMLQCS DGGPSVNSIN GKAIRRRKRI RTSGQSESDD VVSSDLNLHG SDEDNASEIA
0301: TVESNNNSRN EGNGVDSGSK VEYSDAVGEG CDGGHELNKG LDFHISTMVK RKKRKPTRKR ETSDIIDPPA KVEAEGLGPN ACDSCQRSQN SHERLNERPC
0401: EENGDEHLPL VKRARVRMSR AFYADEKVNA SSQVEERSSK DTLLSAALQT SPSVNHENGI GSGHDTSAAE EFNSFELSAK LSGVMVDVVP SHMEKPSDRM
0501: SPSVACVQTV GDRQTAVNFH ENEFTMTLDD EVTRAQSNQL SSLVETEARV PEVVQGCSEE SQTGNCLISE TDPIDIQCSH QSEKHETPLN PDIVDSSANK
0601: SPGLCSSLDM TTTVVPAQSP HQHKIQEYDS SDHSLVIVGD SLNGKCEKID YCMTQVVQSQ ALEPPPPLFC SVVNYQEVEN LQETENTLWK ENQGSPGKEL
0701: DSDKQAHMIQ NPVLSATESE MIVDDAEPQY ETVYSHCADA VENRELEKSC EVDEQKEQMQ ATNSISVSEN FSREKLNSSP ARGTPNCNSV CRISTAESEN
0801: AMQNNSYYST NVQYGENKSL NVDTVKEESK VETGTTQVKK VVSSDVQCTV ESFETALDSL VRTKETIGRA TRLAMDLAKF GVSAKAMEIL AHTLESESNL
0901: QRRVDLFFLV DSIAQCSKGL NGDAGGVYLS SIQAMLPRLL TAAVPAGATT QENRKQCLKV LRLWLERRIL PESIVRHHIR ELDSLSNVPA CLYSRRSART
1001: ERALDDPVRD MEGILVDEYG SNSTLQLHGF CIPPILRDED EGSDSDGGDF ESVTPEHESR SLEEHVTPSI TERHTRILED VDGELEMEDV APPWEGGSSA
1101: SAITDQADNR ESANCLLVPG TSHQNVTSSS PPARPSQNAQ LAMSNSYSNG FDYRRNPSMQ GDYHAGPPRM NPPMHYGSPE PSYSSRVSLS KSMPRGEGSN
1201: FQHRPYPSSH PPPPPPSHHY SYMEPDHHIK SRREGLSYPH RSHYTLEFDE RNYQDSYERM RPEPCENRDN WRYHPPSSHG PRYHDRHKGP HQSSSYSGHH
1301: RDSGRLQNNR WSDSPRAYNN RHSYHYKQHS EGPVPVGMRD PGTWHQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)