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AT3G62970.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc finger (C3HC4-type RING finger) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CTCHY-type (InterPro:IPR017921), Zinc finger, CHY-type (InterPro:IPR008913), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: CHY-type/CTCHY-type/RING-type Zinc finger protein (TAIR:AT5G18650.1); Has 819 Blast hits to 814 proteins in 181 species: Archae - 0; Bacteria - 4; Metazoa - 266; Fungi - 146; Plants - 268; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XXHFeggNOG:KOG1940EMBL:CP002686EnsemblPlants:AT3G62970EnsemblPlants:AT3G62970.1entrez:825472Gene3D:2.20.28.10
Gene3D:3.30.40.10GeneID:825472GO:GO:0008270Gramene:AT3G62970.1hmmpanther:PTHR21319hmmpanther:PTHR21319:SF12InParanoid:F4IZL5
InterPro:IPR001841InterPro:IPR004039InterPro:IPR008913InterPro:IPR013083InterPro:IPR017921iPTMnet:F4IZL5KEGG:ath:AT3G62970
KO:K10144OMA:NTEQEVAPaxDb:F4IZL5Pfam:PF05495Pfam:PF13639Pfam:PF14599Pfscan:PS50089
Pfscan:PS51266Pfscan:PS51270PRIDE:F4IZL5PROSITE:PS50089PROSITE:PS51266PROSITE:PS51270ProteinModelPortal:F4IZL5
Proteomes:UP000006548Reactome:R-ATH-110320RefSeq:NP_191856.4SMART:SM00184SMR:F4IZL5STRING:3702.AT3G62970.1SUPFAM:0053828
SUPFAM:0053829SUPFAM:SSF57850TAIR:AT3G62970UniGene:At.34017UniProt:F4IZL5
Coordinates (TAIR10) chr3:+:23270636..23272698
Molecular Weight (calculated) 32391.40 Da
IEP (calculated) 6.42
GRAVY (calculated) -0.45
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGSASLQSD SMEAAAAADS SIPRDKDFGK FQFGCEHYKR RCKIRAPCCN LIFSCRHCHN DSANSLPDPK ERHDLVRQNV KQVVCSICQT EQEVAKVCSN
101: CGVNMGEYFC DICKFFDDDI SKEQFHCDDC GICRVGGRDK FFHCQNCGAC YGMGLRDKHS CIENSTKNSC PVCYEYLFDS VKAAHVMKCG HTMHMDCFEQ
201: MINENQYRCP ICAKSMVDMS PSWHLLDFEI SATEMPVEYK FEVSILCNDC NKGSKAMFHI LGHKCSDCGS YNTRRISTPQ DPVSETE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)