suba logo
AT3G62960.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.420
endoplasmic reticulum 0.314
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin (InterPro:IPR002109), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Glutaredoxin family protein (TAIR:AT2G47880.1); Has 1273 Blast hits to 1269 proteins in 241 species: Archae - 0; Bacteria - 97; Metazoa - 238; Fungi - 134; Plants - 731; Viruses - 0; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
BioGrid:10785eggNOG:COG0695eggNOG:KOG1752EMBL:AL163816EMBL:BT024662EMBL:CP002686EMBL:FJ611908
EnsemblPlants:AT3G62960EnsemblPlants:AT3G62960.1entrez:825471Gene3D:3.40.30.10GeneID:825471Genevisible:Q9LYC5GO:GO:0005737
GO:GO:0009055GO:GO:0015035GO:GO:0045454Gramene:AT3G62960.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF57HOGENOM:HOG000095204
InParanoid:Q9LYC5InterPro:IPR002109InterPro:IPR011905InterPro:IPR012336InterPro:IPR014025KEGG:ath:AT3G62960OMA:RLGCANA
PaxDb:Q9LYC5Pfam:PF00462Pfam:Q9LYC5Pfscan:PS51354PhylomeDB:Q9LYC5PIR:T48085PRINTS:PR00160
PRO:PR:Q9LYC5PROSITE:PS51354ProteinModelPortal:Q9LYC5Proteomes:UP000006548RefSeq:NP_191855.1SMR:Q9LYC5STRING:3702.AT3G62960.1
SUPFAM:SSF52833TAIR:AT3G62960TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.50307UniProt:Q9LYC5
Coordinates (TAIR10) chr3:+:23268780..23269088
Molecular Weight (calculated) 11283.90 Da
IEP (calculated) 7.87
GRAVY (calculated) 0.18
Length 102 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKVMRMSSE KGVVIFTKSS CCLCYAVQIL FRDLRVQPTI HEIDNDPDCR EIEKALVRLG CANAVPAVFV SGKLVGSTND VMSLHLSGSL VPLIKPYQSF
101: HN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)