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AT3G62950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Thioredoxin superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Thioredoxin superfamily protein; FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: cell redox homeostasis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Glutaredoxin-like, plant II (InterPro:IPR011905), Glutaredoxin (InterPro:IPR002109), Thioredoxin fold (InterPro:IPR012335), Glutaredoxin subgroup (InterPro:IPR014025), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: Thioredoxin superfamily protein (TAIR:AT2G47870.1); Has 1580 Blast hits to 1576 proteins in 382 species: Archae - 0; Bacteria - 356; Metazoa - 244; Fungi - 174; Plants - 738; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
Protein Annotations
BioGrid:10784eggNOG:COG0695eggNOG:KOG1752EMBL:AL163816EMBL:BT015060EMBL:BT015647EMBL:CP002686
EMBL:FJ611904EnsemblPlants:AT3G62950EnsemblPlants:AT3G62950.1entrez:825470Gene3D:3.40.30.10GeneID:825470Genevisible:Q9LYC6
GO:GO:0005737GO:GO:0009055GO:GO:0015035GO:GO:0045454Gramene:AT3G62950.1hmmpanther:PTHR10168hmmpanther:PTHR10168:SF118
HOGENOM:HOG000095204InParanoid:Q9LYC6InterPro:IPR002109InterPro:IPR011905InterPro:IPR012336InterPro:IPR014025KEGG:ath:AT3G62950
OMA:INAKAIWPaxDb:Q9LYC6Pfam:PF00462Pfam:Q9LYC6Pfscan:PS51354PhylomeDB:Q9LYC6PIR:T48084
PRIDE:Q9LYC6PRINTS:PR00160PRO:PR:Q9LYC6PROSITE:PS51354ProteinModelPortal:Q9LYC6Proteomes:UP000006548RefSeq:NP_191854.1
SMR:Q9LYC6STRING:3702.AT3G62950.1SUPFAM:SSF52833TAIR:AT3G62950TIGRfam:TIGR02189TIGRFAMs:TIGR02189UniGene:At.34020
UniProt:Q9LYC6
Coordinates (TAIR10) chr3:+:23266303..23266614
Molecular Weight (calculated) 11312.80 Da
IEP (calculated) 8.89
GRAVY (calculated) -0.06
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MERIRDLSSK KAAVIFTKSS CCMCHSIKTL FYELGASPAI HELDKDPEGR EMERALRALG SSNPAVPAVF VGGRYIGSAK DIISFHVDGS LKQMLKDAKA
101: IWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)