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AT3G62910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peptide chain release factor 1
Curator
Summary (TAIR10)
Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development.
Computational
Description (TAIR10)
ALBINO AND PALE GREEN (APG3); FUNCTIONS IN: translation release factor activity, codon specific, translation release factor activity; INVOLVED IN: translational termination, chloroplast organization; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptide chain release factor 1 (InterPro:IPR004373), Class I peptide chain release factor (InterPro:IPR000352), Peptide chain release factor (InterPro:IPR005139); BEST Arabidopsis thaliana protein match is: Peptide chain release factor 1 (TAIR:AT2G47020.1); Has 17224 Blast hits to 17222 proteins in 2820 species: Archae - 0; Bacteria - 10525; Metazoa - 262; Fungi - 197; Plants - 224; Viruses - 13; Other Eukaryotes - 6003 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0216eggNOG:KOG2726EMBL:AB109893EMBL:AL163816EMBL:AY090253EMBL:AY125535EMBL:CP002686
EnsemblPlants:AT3G62910EnsemblPlants:AT3G62910.1entrez:825466Gene3D:3.30.160.20GeneID:825466Genevisible:Q8RX79GO:GO:0003747
GO:GO:0006415GO:GO:0009507GO:GO:0009658GO:GO:0010027GO:GO:0016149GO:GO:0032544GO:GO:0040008
GO:GO:0043022Gramene:AT3G62910.1HAMAP:MF_00093hmmpanther:PTHR11075hmmpanther:PTHR11075:SF9HOGENOM:HOG000074815InParanoid:Q8RX79
InterPro:IPR000352InterPro:IPR004373InterPro:IPR005139InterPro:IPR014720KEGG:ath:AT3G62910KO:K02835ncoils:Coil
OMA:MYQKYSEPaxDb:Q8RX79Pfam:PF00472Pfam:PF03462Pfam:Q8RX79PhylomeDB:Q8RX79PIR:T48080
PRIDE:Q8RX79PRO:PR:Q8RX79PROSITE:PS00745ProteinModelPortal:Q8RX79Proteomes:UP000006548RefSeq:NP_191850.2scanprosite:PS00745
SMART:SM00937SMR:Q8RX79STRING:3702.AT3G62910.1SUPFAM:SSF75620TAIR:AT3G62910tair10-symbols:APG3TIGRfam:TIGR00019
TIGRFAMs:TIGR00019UniGene:At.28015UniProt:Q8RX79
Coordinates (TAIR10) chr3:-:23257661..23260386
Molecular Weight (calculated) 47531.70 Da
IEP (calculated) 7.79
GRAVY (calculated) -0.53
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSSMTTSPT ARAFLHLHSS PFTLRSRKSP SGVCLVSWPP SRSRRTRRLV CMAEPYLIRK MESVEKTWKE LSVKLADPDV VSNQSEYQKL AQSMSELDEV
101: VTVFRRFKDC EKQLLESKVL AKEAGDDEDM AEMIGSEINS LTKEIEELEK QLKVLLLPSD PLDARNILLE VRAGTGGDEA AIWTGDLVRM YQRYSERSSW
201: KFSMVSCSEA EHGGYKTCVM EIKGNRVYSK LKYESGVHRV QRVPQTETQG RVHTSTATVA IMPEADEVEV VIDPKDIELT SARSGGAGGQ NVNKVETAID
301: LFHKPSGIRI FCTEERTQIR NKARAFQLLR AKLYEIKVRE QQEKIRNERK SQVGTGARSE KIRTYNYKDS RVTDHRLKMN FALTTFLDGA LEDAVQACAA
401: LEQKELMEEL SESVAASSAT SG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)