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AT3G62770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Required for autophagosome formation during nutrient deprivation and senescence.
Computational
Description (TAIR10)
AtATG18a; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: autophagy, leaf senescence, response to starvation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: homolog of yeast autophagy 18 (ATG18) D (TAIR:AT3G56440.1); Has 1516 Blast hits to 1443 proteins in 266 species: Archae - 0; Bacteria - 93; Metazoa - 578; Fungi - 450; Plants - 210; Viruses - 2; Other Eukaryotes - 183 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQZ6eggNOG:KOG2111EMBL:AL162651EMBL:AY039545EMBL:AY059169EMBL:CP002686EnsemblPlants:AT3G62770
EnsemblPlants:AT3G62770.1entrez:825452ExpressionAtlas:Q93VB2Gene3D:2.130.10.10GeneID:825452Genevisible:Q93VB2GO:GO:0000045
GO:GO:0000422GO:GO:0005634GO:GO:0005774GO:GO:0005829GO:GO:0006497GO:GO:0006914GO:GO:0006970
GO:GO:0006979GO:GO:0009414GO:GO:0009651GO:GO:0010150GO:GO:0015031GO:GO:0019898GO:GO:0032266
GO:GO:0034045GO:GO:0034497GO:GO:0042594GO:GO:0044804GO:GO:0048102GO:GO:0050832GO:GO:0080025
hmmpanther:PTHR11227hmmpanther:PTHR11227:SF18HOGENOM:HOG000217543InParanoid:Q93VB2IntAct:Q93VB2InterPro:IPR001680InterPro:IPR015943
InterPro:IPR017986iPTMnet:Q93VB2PaxDb:Q93VB2Pfam:PF00400Pfam:Q93VB2PhylomeDB:Q93VB2PIR:T48066
PRIDE:Q93VB2PRO:PR:Q93VB2ProteinModelPortal:Q93VB2Proteomes:UP000006548RefSeq:NP_567132.4SMART:SM00320SMR:Q93VB2
STRING:3702.AT3G62770.1SUPFAM:SSF50978TAIR:AT3G62770tair10-symbols:AtATG18aUniGene:At.22512UniGene:At.4833UniProt:Q93VB2
Coordinates (TAIR10) chr3:-:23218858..23221110
Molecular Weight (calculated) 46802.40 Da
IEP (calculated) 7.52
GRAVY (calculated) -0.27
Length 425 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVSSSSWP NPNPNPDSTS ASDSDSTFPS HRDRVDEPDS LDSFSSMSLN SDEPNQTSNQ SPLSPPTPNL PVMPPPSVLH LSFNQDHACF AVGTDRGFRI
101: LNCDPFREIF RRDFDRGGGV AVVEMLFRCN ILALVGGGPD PQYPPNKVMI WDDHQGRCIG ELSFRSDVRS VRLRRDRIIV VLEQKIFVYN FSDLKLMHQI
201: ETIANPKGLC AVSQGVGSMV LVCPGLQKGQ VRIEHYASKR TKFVMAHDSR IACFALTQDG HLLATASSKG TLVRIFNTVD GTLRQEVRRG ADRAEIYSLA
301: FSSNAQWLAV SSDKGTVHVF GLKVNSGSQV KDSSRIAPDA TPSSPSSSLS LFKGVLPRYF SSEWSVAQFR LVEGTQYIAA FGHQKNTVVI LGMDGSFYRC
401: QFDPVNGGEM SQLEYHNCLK PPSVF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)