AT3G62430.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plasma membrane 0.865 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Protein with RNI-like/FBD-like domains | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Protein with RNI-like/FBD-like domains; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G54160.1); Has 1224 Blast hits to 1202 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1224; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:23093795..23095304 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 49902.00 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||||||
Length | 437 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDRISNLPDG VIYRVISLLS TKEATCLKYT SKNWLNLVTI IPIAVFVDSS ASAISASFKD FADRIMLARL ASHRIRRFSL KLQSLNFAQY KTVNDCLRNV 101: LECGVLDLEL DINVRGDYSL PSEIFTCKSV VKMKLGSGFV IDILPKNAWL PALKTLLLDT VRFEFDNTAG CSFTKLISAC PVLEELVIDG HNCEDWKWSR 201: RVSSQILKRL TIRRKEWVHD GSSFEPISLD IPSLEYFKYF DTLRDSYPVV KLNSLVEAKL ELPSLYIGDT YNVRNLIKGL KNVQILRLGA VDTMHLFWVF 301: REAVPVFENL FHLSVSTHDA ICWDDLRILL EKSPNLKTLT IEALHYHGYG DENSVCECLD GYSFLLSCPI EILKITEFGG EIEEMEQVEY VLENLLCLVL 401: LEIHVKTKKI DRKLQILADL LMLPRASSKC KVQVKFV |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)