AT3G62300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DOMAIN OF UNKNOWN FUNCTION 724 7 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the plant-specific DUF724 protein family. Arabidopsis has 10 DUF724 proteins. Loss of function mutant has a WT phenotype | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DOMAIN OF UNKNOWN FUNCTION 724 7 (DUF7); FUNCTIONS IN: RNA binding; LOCATED IN: nucleus; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Protein of unknown function DUF724 (InterPro:IPR007930); BEST Arabidopsis thaliana protein match is: DOMAIN OF UNKNOWN FUNCTION 724 6 (TAIR:AT2G47230.1); Has 299 Blast hits to 227 proteins in 36 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 252; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23054247..23057081 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80744.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.36 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.48 | ||||||||||||||||||||||||||||||||
| Length | 722 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLLTTGRKEK LSVSKGSEIE ISSQEYEYGS GNVWYCVILE ENLAKSKRKK LSVRHLDPLL KYDYSPPLIK TTVHRFMRPV PPPDPFPEVD FEEGDVVDAA 101: YKGGWCSGSV VKVLGNRRFL VYLRFQPDVI ELLRKDLRPH FVWKDEEWFR CEKQQLIESD FSAGKSVEVR TKVDKLGDVW APAMVIKEDE DGTMLVKLKT 201: LKEEEVNCTK ISVSYSEIRP SPLPIGLRDY KLMENVDALV ESGWCPGVVS KVLAGKRYAV DLGPNRESKE FSRLQLRPSI EWKDGIWHRK EKVSGSEESS 301: HAVEETAAST RIRITVRTAL KEKKALGTGI NVRTTRSSSG AMHNPLPASF NGGDVAEAGR VSVTVNETPL FETAALSGEL GNSLADVVMN ESAPVTSQPE 401: IAAPKEFHPS VVLGVAAAVK TQGKTTPKKK LQAMKNQKSS TNDSVGEKVS VNKRKRGQPR KFIVAEPKQK IGVSGNNSKA ATIEHADMTD DDRPLASWVH 501: TGNSSSGQSV SRTPDIGLNT VVEKHVDIVE TPPGRESTMV LPFVKKSQLW KVLESMEVFK VVPQSPHFSP LLESEEECRE GDAIGRMVMF SSLLEKVNNL 601: QVDDPISSIN RIDECFLKLE KHGFNVTTPR SRIAKILSIK ERQTCALEEL KAVEEKITEN DNKRRKYEED IVELQRQEVL MKEAKVTLDN EIARMQSQAA 701: VLDQEVQNVD HEFQAILAAP WK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)