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AT3G62290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.663
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ADP-ribosylation factor A1E
Curator
Summary (TAIR10)
A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct.
Computational
Description (TAIR10)
ADP-ribosylation factor A1E (ARFA1E); FUNCTIONS IN: phospholipase activator activity, GTP binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ADP-ribosylation factor (InterPro:IPR006688), Small GTP-binding protein (InterPro:IPR005225), Ras small GTPase, Rab type (InterPro:IPR003579), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT2G47170.1); Has 15041 Blast hits to 15022 proteins in 509 species: Archae - 14; Bacteria - 51; Metazoa - 7727; Fungi - 1941; Plants - 2031; Viruses - 3; Other Eukaryotes - 3274 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1100eggNOG:KOG0070EMBL:AF372902EMBL:AL138651EMBL:AY057728EMBL:AY085382EMBL:CP002686
EnsemblPlants:AT3G62290EnsemblPlants:AT3G62290.1EnsemblPlants:AT3G62290.2EnsemblPlants:AT3G62290.3entrez:825402Gene3D:3.40.50.300GeneID:825402
GO:GO:0005525GO:GO:0005773GO:GO:0005794GO:GO:0007264GO:GO:0009506GO:GO:0016004GO:GO:0043085
Gramene:AT3G62290.1Gramene:AT3G62290.2Gramene:AT3G62290.3hmmpanther:PTHR11711hmmpanther:PTHR11711:SF181HOGENOM:HOG000163691IntAct:Q9M1P5
InterPro:IPR005225InterPro:IPR006689InterPro:IPR024156InterPro:IPR027417KEGG:ath:AT3G62290KO:K07937MINT:MINT-7146921
OMA:DARNELHPfam:PF00025Pfscan:PS51417PhylomeDB:Q9M1P5PIR:T48021PRINTS:PR00328PROSITE:PS51417
Proteomes:UP000006548Reactome:R-ATH-1660514Reactome:R-ATH-199997Reactome:R-ATH-421837RefSeq:NP_001190161.1RefSeq:NP_001190162.1RefSeq:NP_191788.1
SMR:Q9M1P5STRING:3702.AT3G62290.1SUPFAM:SSF52540TAIR:AT3G62290tair10-symbols:ARFA1Etair10-symbols:ATARFA1ETIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.25484UniGene:At.67707UniProt:Q9M1P5
Coordinates (TAIR10) chr3:+:23052287..23053545
Molecular Weight (calculated) 20608.80 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.22
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLSFGKLFS KLFAKKEMRI LMVGLDAAGK TTILYKLKLG EIVTTIPTIG FNVETVEYKN ISFTVWDVGG QDKIRPLWRH YFQNTQGLIF VVDSNDRDRV
101: VEARDELHRM LNEDELRDAV LLVFANKQDL PNAMNAAEIT DKLGLHSLRQ RHWYIQSTCA TSGEGLYEGL DWLSNNIANK A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)