suba logo
AT3G62250.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.654
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:17934214 (2008): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ubiquitin 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin 5 (UBQ5); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12703 Blast hits to 7391 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5541; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Protein Annotations
BioGrid:10712eggNOG:COG1998eggNOG:ENOG410ITMZEMBL:AK226902EMBL:AL138651EMBL:AY052219EMBL:AY084978
EMBL:AY139810EMBL:CP002686EMBL:J05539EnsemblPlants:AT3G62250EnsemblPlants:AT3G62250.1entrez:825398GeneID:825398
Genevisible:P59233GO:GO:0003735GO:GO:0005634GO:GO:0005794GO:GO:0006412GO:GO:0022627GO:GO:0046872
Gramene:AT3G62250.1hmmpanther:PTHR10666InParanoid:P59233IntAct:P59233InterPro:IPR000626InterPro:IPR002906InterPro:IPR011332
InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071KEGG:ath:AT3G62250KO:K02977OMA:VYQKEGGPaxDb:P59233
Pfam:P59233Pfam:PF00240Pfam:PF01599Pfscan:PS50053PIR:C36571PRIDE:P59233PRINTS:PR00348
PRO:PR:P59233PROSITE:PS00299PROSITE:PS50053ProteinModelPortal:P59233Proteomes:UP000006548Reactome:R-ATH-110312Reactome:R-ATH-110314
Reactome:R-ATH-110320Reactome:R-ATH-156827Reactome:R-ATH-174184Reactome:R-ATH-179409Reactome:R-ATH-1799339Reactome:R-ATH-349425Reactome:R-ATH-450302
Reactome:R-ATH-450321Reactome:R-ATH-5358346Reactome:R-ATH-5632684Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169Reactome:R-ATH-5696394
Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68949
Reactome:R-ATH-69017Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-917729Reactome:R-ATH-975956
Reactome:R-ATH-975957Reactome:R-ATH-983168RefSeq:NP_191784.1scanprosite:PS00299SMART:SM00213SMART:SM01402SMR:P59233
STRING:3702.AT3G62250.1SUPFAM:SSF54236SUPFAM:SSF57829TAIR:AT3G62250tair10-symbols:UBQ5UniGene:At.17613UniGene:At.24823
UniGene:At.333UniProt:P59233
Coordinates (TAIR10) chr3:+:23037138..23037611
Molecular Weight (calculated) 17797.80 Da
IEP (calculated) 10.46
GRAVY (calculated) -0.69
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKIDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGVEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)