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AT3G62130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein; FUNCTIONS IN: pyridoxal phosphate binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class V/Cysteine desulfurase (InterPro:IPR000192), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (TAIR:AT5G26600.1); Has 4302 Blast hits to 4302 proteins in 1284 species: Archae - 105; Bacteria - 2583; Metazoa - 32; Fungi - 216; Plants - 120; Viruses - 0; Other Eukaryotes - 1246 (source: NCBI BLink).
Protein Annotations
EC:4.4.1.28eggNOG:COG0520eggNOG:ENOG410INGQEMBL:AL138651EMBL:AY062517EMBL:AY086807EMBL:BT008756
EMBL:CP002686EnsemblPlants:AT3G62130EnsemblPlants:AT3G62130.1entrez:825386Gene3D:3.40.640.10GeneID:825386Genevisible:Q9M1R1
GO:GO:0005829GO:GO:0019450GO:GO:0080146Gramene:AT3G62130.1hmmpanther:PTHR11601hmmpanther:PTHR11601:SF47HOGENOM:HOG000029536
InParanoid:Q9M1R1InterPro:IPR000192InterPro:IPR015421InterPro:IPR015424KEGG:ath:AT3G62130OMA:HCAFQSVPaxDb:Q9M1R1
Pfam:PF00266Pfam:Q9M1R1PhylomeDB:Q9M1R1PIR:T48005PRIDE:Q9M1R1PRO:PR:Q9M1R1ProteinModelPortal:Q9M1R1
Proteomes:UP000006548RefSeq:NP_191772.1SMR:Q9M1R1STRING:3702.AT3G62130.1SUPFAM:SSF53383TAIR:AT3G62130UniGene:At.1008
UniProt:Q9M1R1
Coordinates (TAIR10) chr3:+:23004994..23006358
Molecular Weight (calculated) 50694.80 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.23
Length 454 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAGERRNGD SMSHNHRAPK KPRLAGLLTE SDIDSEFAHH QTGVARINNG SFGCCPGSVL EAQREWQLRY LRQPDEFYFN GLRRGLLASR TVISDLINAD
101: DVDEVSLVDN ATTAAAIVLQ KVGRCFSEGK YKKEDTVVMF HCAFQSVKKS IQAYVSRVGG STVEVRLPFP VNSNEEIISK FREGLEKGRA NGRTVRLAII
201: DHITSMPCVL MPVRELVKIC REEGVEQVFV DAAHAIGSVK VDVKEIGADY YVSNLHKWFF CPPSIAFFYC KKRGSESDVH HPVVSHEFGN GLPIESAWIG
301: TRDYSSQLVV PSVMEFVNRF EGGMEGIMMK NHDEAVRMGL MLADAWGTNL GSPPEMCVGM VMIGLPSKLC VGSDEDAIKL RSYLRVHYSV EVPVFYLGLR
401: DGEEGVKDKD SGLITAYVRI SHQVYNKTED YERLRDAITE LVKDQMTCQN LPAL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)