AT3G62080.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.712 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SNF7 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SNF7 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22986383..22988517 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47496.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.75 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||
| Length | 423 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPEAVKEFI RREVPDWDDE VVAMARFKAF SGQRSDWELK FQFWRDLIIK VSRQFGLFII DPVQVKKAWF DRGGMTPLCI DDVVLLMHSE GDVVRISDLD 101: DPGSGRIARL LRTVKNLMVQ QPVKQEEILE NTLVLVPLLK EKAADVVKIL SEGHWTSTCV VTLKKFRNLC NGSNEASAVL SHLSGCGKAH KISINRGELI 201: EGVKVSFSQT ALPGISTLDC DILHLLRTTE KLQDQLEVMD QRCEKSKKSA LASLKSGHRK VALRHARELK VVTESREKCT SLLNRVEEVL NTIADSESTK 301: MVSEAIKTGA RVMKDIKISA DDVHDYLEEL EETIESQKQV EKALESAPYP DIDDEDIEEE LLELEMDLES ESSQVLPATS DTADSLTEMF SELKLGKTKQ 401: TLEEQATEPA QMKDSGKKIL EAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)