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AT3G62040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.910
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pyrimidine 5-nucleotidase (InterPro:IPR010237), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT5G59480.1); Has 2327 Blast hits to 2327 proteins in 521 species: Archae - 22; Bacteria - 785; Metazoa - 0; Fungi - 147; Plants - 198; Viruses - 0; Other Eukaryotes - 1175 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1011eggNOG:KOG3109EMBL:AL138642EMBL:BT010899EMBL:CP002686EnsemblPlants:AT3G62040EnsemblPlants:AT3G62040.1
entrez:825377Gene3D:3.40.50.1000GeneID:825377GO:GO:0016787Gramene:AT3G62040.1hmmpanther:PTHR12725hmmpanther:PTHR12725:SF73
HOGENOM:HOG000239954InterPro:IPR006439InterPro:IPR010237InterPro:IPR023214KEGG:ath:AT3G62040KO:K18551OMA:SHEASSH
Pfam:PF13419PhylomeDB:Q9M262PIR:T47996Proteomes:UP000006548RefSeq:NP_191763.3SMR:Q9M262STRING:3702.AT3G62040.1
SUPFAM:SSF56784TAIR:AT3G62040TIGRfam:TIGR01509TIGRfam:TIGR01993TIGRFAMs:TIGR01509TIGRFAMs:TIGR01993UniGene:At.24742
UniGene:At.48797UniProt:Q9M262
Coordinates (TAIR10) chr3:-:22975328..22976518
Molecular Weight (calculated) 27920.40 Da
IEP (calculated) 4.42
GRAVY (calculated) -0.12
Length 249 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGFGANYEC LFFDMDDTLY PLSIGINLAC RNNIQEFMLN QLGIEESEVP KLCLDLYKEY GTTMAGLKVM GYEFDNDEFH EYVHGRLPYE KLKPDPLLRN
101: LLLSMPHRKI IFTNADKAHA TRALNRLGLE DCFEGIICFE TLNPSSDSNT QILCKPSVEA FEAAIRIADI VDPRKTIFFD DSIRNIASAK ATGLKTVFVG
201: ESVLVPGADY ALSSIHNIKE AIPDLWEDNK DEKLEPIVQQ AAVATMVNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)