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AT3G62030.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : rotamase CYP 4
Curator
Summary (TAIR10)
nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
Computational
Description (TAIR10)
rotamase CYP 4 (ROC4); FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: in 9 processes; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: cyclophilin 20-2 (TAIR:AT5G13120.1); Has 16567 Blast hits to 16531 proteins in 2704 species: Archae - 108; Bacteria - 6870; Metazoa - 2913; Fungi - 1380; Plants - 1296; Viruses - 4; Other Eukaryotes - 3996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G62030-MONOMERBioCyc:ARA:GQT-1088-MONOMERBioCyc:ARA:GQT-1089-MONOMERBioGrid:10690BRENDA:5.2.1.8DIP:DIP-32746NEC:5.2.1.8
eggNOG:ENOG410Z0G4eggNOG:KOG0880EMBL:AF325026EMBL:AL138642EMBL:AY059843EMBL:AY086899EMBL:AY093284
EMBL:CP002686EMBL:L14845EMBL:U42724EnsemblPlants:AT3G62030EnsemblPlants:AT3G62030.1entrez:825376ExpressionAtlas:P34791
Gene3D:2.40.100.10GeneID:825376Genevisible:P34791GO:GO:0003755GO:GO:0006457GO:GO:0009570GO:GO:0042277
hmmpanther:PTHR11071hmmpanther:PTHR11071:SF247HOGENOM:HOG000065981InParanoid:P34791IntAct:P34791InterPro:IPR002130InterPro:IPR020892
InterPro:IPR024936InterPro:IPR029000PANTHER:PTHR11071PaxDb:P34791Pfam:P34791Pfam:PF00160Pfscan:PS50072
PhylomeDB:P34791PIR:B53422PRIDE:P34791PRINTS:PR00153PRO:PR:P34791PROSITE:PS00170PROSITE:PS50072
ProteinModelPortal:P34791Proteomes:UP000006548RefSeq:NP_191762.1scanprosite:PS00170SMR:P34791STRING:3702.AT3G62030.2SUPFAM:SSF50891
SWISS-2DPAGE:P34791TAIR:AT3G62030tair10-symbols:ROC4UniGene:At.24742UniGene:At.48797UniProt:P34791
Coordinates (TAIR10) chr3:+:22973708..22975139
Molecular Weight (calculated) 28209.80 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.17
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSSMQMV HTSRSIAQIG FGVKSQLVSA NRTTQSVCFG ARSSGIALSS RLHYASPIKQ FSGVYATTKH QRTACVKSMA AEEEEVIEPQ AKVTNKVYFD
101: VEIGGEVAGR IVMGLFGEVV PKTVENFRAL CTGEKKYGYK GSSFHRIIKD FMIQGGDFTE GNGTGGISIY GAKFEDENFT LKHTGPGILS MANAGPNTNG
201: SQFFICTVKT SWLDNKHVVF GQVIEGMKLV RTLESQETRA FDVPKKGCRI YACGELPLDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)