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AT3G61950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G46810.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:10682eggNOG:ENOG410JTUNeggNOG:ENOG41107HUEMBL:AF488600EMBL:AJ630481EMBL:AK118527EMBL:AL138642
EMBL:AY088741EMBL:AY568653EMBL:BT005298EMBL:CP002686EnsemblPlants:AT3G61950EnsemblPlants:AT3G61950.1entrez:825368
Gene3D:4.10.280.10GeneID:825368Genevisible:Q700E4GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR11969hmmpanther:PTHR11969:SF29HOGENOM:HOG000238962InParanoid:Q700E4IntAct:Q700E4InterPro:IPR011598
iPTMnet:Q700E4KEGG:ath:AT3G61950ncoils:CoilOMA:RINHIAVPaxDb:Q700E4Pfam:PF00010Pfam:Q700E4
Pfscan:PS50888PhylomeDB:Q700E4PIR:T47987PRIDE:Q700E4PRO:PR:Q700E4PROSITE:PS50888ProteinModelPortal:Q700E4
Proteomes:UP000006548RefSeq:NP_567121.1RefSeq:NP_850735.1SMART:SM00353SMR:Q700E4STRING:3702.AT3G61950.1SUPFAM:SSF47459
TAIR:AT3G61950UniGene:At.22308UniProt:Q700E4
Coordinates (TAIR10) chr3:+:22939661..22941332
Molecular Weight (calculated) 41032.60 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.63
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MERFQGHINP CFFDRKPDVR SLEVQGFAEA QSFAFKEKEE ESLQDTVPFL QMLQSEDPSS FFSIKEPNFL TLLSLQTLKE PWELERYLSL EDSQFHSPVQ
101: SETNRFMEGA NQAVSSQEIP FSQANMTLPS STSSPLSAHS RRKRKINHLL PQEMTREKRK RRKTKPSKNN EEIENQRINH IAVERNRRRQ MNEHINSLRA
201: LLPPSYIQRG DQASIVGGAI NYVKVLEQII QSLESQKRTQ QQSNSEVVEN ALNHLSGISS NDLWTTLEDQ TCIPKIEATV IQNHVSLKVQ CEKKQGQLLK
301: GIISLEKLKL TVLHLNITTS SHSSVSYSFN LKMEDECDLE SADEITAAVH RIFDIPTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)