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AT3G61790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein with RING/U-box and TRAF-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, ubiquitin-dependent protein catabolic process, protein ubiquitination; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Zinc finger, RING-type (InterPro:IPR001841), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT4G27880.1); Has 1836 Blast hits to 1817 proteins in 706 species: Archae - 0; Bacteria - 0; Metazoa - 1264; Fungi - 11; Plants - 486; Viruses - 2; Other Eukaryotes - 73 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2015-MONOMERBioGrid:10666EC:6.3.2.-eggNOG:ENOG410XVP0eggNOG:KOG3002EMBL:AL132959EMBL:AY084712
EMBL:BT003967EMBL:BT005079EMBL:CP002686EnsemblPlants:AT3G61790EnsemblPlants:AT3G61790.1entrez:825352Gene3D:2.60.210.10
Gene3D:3.30.40.10Gene3D:3.90.890.10GeneID:825352Genevisible:Q84JL3GO:GO:0004842GO:GO:0005634GO:GO:0006511
GO:GO:0007275GO:GO:0008270GO:GO:0016874Gramene:AT3G61790.1hmmpanther:PTHR10315hmmpanther:PTHR10315:SF34HOGENOM:HOG000231487
InParanoid:Q84JL3IntAct:Q84JL3InterPro:IPR001841InterPro:IPR004162InterPro:IPR008974InterPro:IPR013010InterPro:IPR013083
InterPro:IPR013323InterPro:IPR018121KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-KEGG:ath:AT3G61790KO:K04506
OMA:PKANVAGPANTHER:PTHR10315PaxDb:Q84JL3Pfam:PF03145Pfam:Q84JL3Pfscan:PS50089Pfscan:PS51081
PhylomeDB:Q84JL3PIR:T47971PRIDE:Q84JL3PRO:PR:Q84JL3PROSITE:PS50089PROSITE:PS51081ProteinModelPortal:Q84JL3
Proteomes:UP000006548RefSeq:NP_567118.1SMR:Q84JL3STRING:3702.AT3G61790.1SUPFAM:SSF49599SUPFAM:SSF57850TAIR:AT3G61790
UniGene:At.21009UniPathway:UPA00143UniProt:Q84JL3
Coordinates (TAIR10) chr3:-:22871974..22873543
Molecular Weight (calculated) 36948.80 Da
IEP (calculated) 6.93
GRAVY (calculated) -0.48
Length 326 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLDSMDCTS TMDVTDDEEI HQDRHSYASV SKHHHTNNNT TNVNAAASGL LPTTTSVHEL LECPVCTNSM YPPIHQCHNG HTLCSTCKAR VHNRCPTCRQ
101: ELGDIRCLAL EKVAESLELP CKHMSLGCPE IFPYYSKLKH ETVCNFRPYS CPYAGSECSV TGDIPFLVAH LRDDHKVDMH SGCTFNHRYV KSNPREVENA
201: TWMLTVFHCF GQYFCLHFEA FQLGMAPVYM AFLRFMGDET EARNYNYSLE VGGYGRKLIW EGTPRSVRDS HRKVRDSHDG LIIQRNMALF FSGGDRKELK
301: LRVTGRIWKE QQQSGEGGGA CIPNLS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)