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AT3G61780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : embryo defective 1703
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 1703 (emb1703); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28400.1); Has 1076 Blast hits to 906 proteins in 181 species: Archae - 8; Bacteria - 72; Metazoa - 301; Fungi - 122; Plants - 81; Viruses - 2; Other Eukaryotes - 490 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFZIeggNOG:ENOG410YCX4EMBL:AL132959EMBL:CP002686EnsemblPlants:AT3G61780EnsemblPlants:AT3G61780.1entrez:825351
GeneID:825351Gramene:AT3G61780.1hmmpanther:PTHR34962hmmpanther:PTHR34962:SF1HOGENOM:HOG000091027KEGG:ath:AT3G61780ncoils:Coil
OMA:LCYIIQAPhylomeDB:Q9M360PIR:T47970Proteomes:UP000006548RefSeq:NP_191737.1STRING:3702.AT3G61780.1TAIR:AT3G61780
tair10-symbols:emb1703UniGene:At.54035UniProt:Q9M360
Coordinates (TAIR10) chr3:-:22867814..22871462
Molecular Weight (calculated) 127928.00 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.79
Length 1121 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEVLLNSNDG FFNFSSFSSN SNRRLANQRR FNLPISKFHY YRVSILRVSA RFGETSRRRN SLRKKIIGDE YWRSTPKSSE PGTKPLNESH KFGHCDDLSS
0101: TEGLKDRVAQ DSNLLNELED WVARYNKEAE FWGIGSNPIF TVYQDSVGNV EKVEVDEDEV LSRRRSALGD LESVSSKLVY AKKLAEQMEN GEHVIHKESS
0201: LVKFVSSSSS SEEEFRLVSS VQNAILRLDL IPKLPAIGRA VLCGYIGLWL LKTVLVYRKS NEVECTELEK EMMRRKMKAW QERDMSEKGT VEVLHKEGLE
0301: KPLMSFEKPK FDRNELMTSI SKVKGSEKKL ELVNSPHVEL DFVDKIHEIK AMARRAREIE AGIELNEKQK LDVNKETGDN EEDISIQSQK SLPHEALTHS
0401: EGDDDKDERL GTSTDSENTE LSGFAVPMLN GAMVDFGFLN HEMAASDKEK VSNVVPPVPT DGVIQSSDVS KDQLSMMKNS TGRKSRVIRS VKEAKEFLSR
0501: RSGEKELTQE PSQMIAQDSV EIFSKQSDEE RGVARKHELV DKNKILGAAV NGTLKSALES TSSEPLGKDA DCQPQKNDYQ KLSEPGNAVK GSSKQINSSN
0601: KIEEHNFKFA KSSSGGTEHI EKEEPSGKGN WIENNYHEFE PVVEKMRAGF RDNYMAAREG ETREPGTIAE IAELYRSEYN DELEWMKDEK LRDIVFHVRD
0701: NELAGRDPFH LIDDEDKAMF LQGLEKKVEK ENEKLSHLHQ WIHSNIENLD YGVDGVSVYD PLEKIIPRWK GPSLDKNPEF LNNYHEQREA LFSEKAASVS
0801: PVKYEEQSSH QELSESASSE NTLTPSSEIT SSQPKIVVEG SDGSVRPGKK SGKEYWQHTK KWSRGFLELY NAETDPEVKA VMRDMGKDLD RWITEDEIKD
0901: AADIMEKLPE RNKKFMEKKL NKLKREMELF GPQAVLSKYR EYGEDKEEDY LWWLDLPHVL CLELYTVDEN GEQQVGFYTL EMATDLELEP KPHHVIAFED
1001: AADCRNLCYI IQAHLDMLRS GNVFIVPRPP KDAYREAKAN GFGVTVIRKG ELKLNIDEPL EEVEEEICEI GSKMYHDKIM GERSVDISSL MKGVFNLKTK
1101: PTGRRRKRSK QALKDSNKKS S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)