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AT3G61700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant protein 1589 of unknown function
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT2G46420.1); Has 261 Blast hits to 259 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJF5eggNOG:ENOG4111H9HEMBL:AK221540EMBL:CP002686EnsemblPlants:AT3G61700EnsemblPlants:AT3G61700.1entrez:825343
ExpressionAtlas:Q56XY3GeneID:825343Gramene:AT3G61700.1hmmpanther:PTHR31871hmmpanther:PTHR31871:SF9HOGENOM:HOG000241257InterPro:IPR006476
Pfam:PF09713PhylomeDB:Q56XY3Proteomes:UP000006548RefSeq:NP_191729.2TAIR:AT3G61700TIGRfam:TIGR01589TIGRFAMs:TIGR01589
UniGene:At.34244UniProt:Q56XY3
Coordinates (TAIR10) chr3:+:22836414..22838803
Molecular Weight (calculated) 39237.10 Da
IEP (calculated) 4.58
GRAVY (calculated) -0.41
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MKNGQCAQEL QSSTQASHDS QGDQKTNLSI DAPIQDSGSV SASSNDSRKV SRQDIELVQN LIERCLQLYM NRDEVVKTLL TRARIDPGFT TLVWQKLEEE
101: NADFFRAYYI RLKLKKQIIL FNHLLEHQYH LMKYPPGPPK VPLAPIQNGM HPMAPVNMPM GYPVLQHPQM HVPGHPHHLD AMGVSSCHVV NGVPAPANFH
201: PLRMNTANDM VIDTTANDAT PQVIPPNSGA MPEMVASPAS VASSGHFPFA ASDMSGMVMD TSVLDSAFTS DVGPDGEGAG NSRDSLRSFD QIPWNFSLSD
301: LTADLSNLGD LGALGNYPGS PFLPSDSEIF LDSPEQEDIE EFFVDSVPGP RSNSDEEKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)