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AT3G61620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : 3'-5'-exoribonuclease family protein
Curator
Summary (TAIR10)
exonuclease RRP41 (RRP41)
Computational
Description (TAIR10)
RRP41; FUNCTIONS IN: 3'-5'-exoribonuclease activity, RNA binding; INVOLVED IN: RNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: 3'-5'-exoribonuclease family protein (TAIR:AT4G27490.1); Has 12943 Blast hits to 12918 proteins in 2731 species: Archae - 406; Bacteria - 8580; Metazoa - 462; Fungi - 283; Plants - 250; Viruses - 0; Other Eukaryotes - 2962 (source: NCBI BLink).
Protein Annotations
DNASU:825335eggNOG:COG0689eggNOG:KOG1068EMBL:AF191741EMBL:AK118846EMBL:AL132959EMBL:BT005485
EMBL:CP002686EnsemblPlants:AT3G61620EnsemblPlants:AT3G61620.1EnsemblPlants:AT3G61620.2entrez:825335Gene3D:3.30.230.70GeneID:825335
GO:GO:0000176GO:GO:0000177GO:GO:0003723GO:GO:0005730GO:GO:0005829GO:GO:0016075GO:GO:0031125
GO:GO:0034427GO:GO:0034475GO:GO:0071028GO:GO:0071051Gramene:AT3G61620.1Gramene:AT3G61620.2hmmpanther:PTHR11953
hmmpanther:PTHR11953:SF0HOGENOM:HOG000229515IntAct:Q9SP08InterPro:IPR001247InterPro:IPR015847InterPro:IPR020568InterPro:IPR027408
KEGG:ath:AT3G61620KO:K11600OMA:FKMYLQQPaxDb:Q9SP08Pfam:PF01138Pfam:PF03725PhylomeDB:Q9SP08
PIR:T47954PRO:PR:Q9SP08Proteomes:UP000006548Reactome:R-ATH-429958Reactome:R-ATH-450604RefSeq:NP_001118878.1RefSeq:NP_191721.1
SMR:Q9SP08STRING:3702.AT3G61620.1SUPFAM:SSF54211SUPFAM:SSF55666TAIR:AT3G61620tair10-symbols:RRP41UniGene:At.20638
UniProt:Q9SP08
Coordinates (TAIR10) chr3:-:22801382..22802910
Molecular Weight (calculated) 26553.00 Da
IEP (calculated) 5.18
GRAVY (calculated) -0.16
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MEYVNPEGLR LDGRRFNEMR QIVAEVGVVS KADGSAVFEM GNTKVIAAVY GPREIQNKSQ QKKNDHAVVL CEYSMAQFST GDRRRQKFDR RSTELSLVIR
101: QTMEACILTE LMPHSQIDIF LQVLQADGGT RSACINAATL ALADAGIPMR DLAVSCSAGY LNSTPLLDLN YVEDSAGGAD VTVGILPKLD KVSLLQMDAK
201: LPMETFETVF ALASEGCKAI AERIREVLQE NTKQLEYRRA A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)