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AT3G61570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
ASURE: golgi
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRIP-related ARF-binding domain-containing protein 1
Curator
Summary (TAIR10)
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein.
Computational
Description (TAIR10)
GRIP-related ARF-binding domain-containing protein 1 (GDAP1); BEST Arabidopsis thaliana protein match is: golgin candidate 4 (TAIR:AT2G46180.1); Has 126642 Blast hits to 68271 proteins in 2953 species: Archae - 1677; Bacteria - 19686; Metazoa - 56998; Fungi - 11244; Plants - 6158; Viruses - 661; Other Eukaryotes - 30218 (source: NCBI BLink).
Protein Annotations
BioGrid:10644eggNOG:ENOG410IGHReggNOG:ENOG41126V8EMBL:AK226722EMBL:AL132962EMBL:BT002756EMBL:CP002686
EMBL:EU249332EnsemblPlants:AT3G61570EnsemblPlants:AT3G61570.1entrez:825330GeneID:825330Genevisible:Q84WU4GO:GO:0005768
GO:GO:0005794GO:GO:0007030Gramene:AT3G61570.1hmmpanther:PTHR18921HOGENOM:HOG000084562InParanoid:Q84WU4iPTMnet:Q84WU4
KEGG:ath:AT3G61570ncoils:CoilOMA:NQEDNRLPaxDb:Q84WU4Pfam:Q84WU4PhylomeDB:Q84WU4PIR:T47949
PRIDE:Q84WU4PRO:PR:Q84WU4ProteinModelPortal:Q84WU4Proteomes:UP000006548RefSeq:NP_191716.2STRING:3702.AT3G61570.1TAIR:AT3G61570
tair10-symbols:GC3tair10-symbols:GDAP1UniGene:At.34265UniProt:Q84WU4
Coordinates (TAIR10) chr3:-:22779637..22783642
Molecular Weight (calculated) 81728.00 Da
IEP (calculated) 6.25
GRAVY (calculated) -1.02
Length 712 amino acids
Sequence (TAIR10)
(BLAST)
001: MWSSIENMKA NLHKIVLDVH EDDEEEDDLH KYGSANGVSN SDRRNSSGFR SVSRYSISNG IESPAHHEIE RYKAEIKKLQ ESESDIKALS VNYAALLREK
101: EDQISRLNQE NGSLKQNLTS TSAALKEART DISRGSNNYA IKGNNDQSPN RLHKSVSHLK SPNHMSNGKG KDTDSFIKEK DLADMLEDRT KSMAAVQATE
201: LAKEREKLRD FQLSLQEERK RSESFKEELE SMRLDKNKTS MEISKMRSEL DAKLLEIKHL QMKLTGQESH AIGPGMEHLK EVNKALEKEN NELKLKRSEL
301: EAALEESRKL TNSKVFPDAT ESLTRHPSTL DKEKPESFPG KEEMEQSLQR LEMDLKETQR ERDKARQELK RLKQHLLEKE TEESEKMDED SRLIEELRQT
401: NEYQRSQISH LEKSLKQAIS NQEDNRLSND NQIRKLKDTV DDLNQKLTNC LRTIESKNVE LLNLQTALGQ YYAEIEAKEH FERELAMAKD ELMKLSARLK
501: DSDERLESSN KEKEDVTSKL LHAEKVAAEW KNRVTKVEED NAKVRRVLEQ SMTRLNRMSM ESDYLVDRRI VIKLLVTYFQ KNHNKEVLDL MVRMLGFSEE
601: DKERIGAAKQ GGGKGVVRGV LGFPGRFVGG ILGGKSAELH ANAASDNQSF ADLWVDFLLK DAEERERREA EEAAASKAKQ DSERTRQEAA LHDSEFSTVP
701: LRSSESNQRL SR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)