AT3G61570.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 ASURE: golgi What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : GRIP-related ARF-binding domain-containing protein 1 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC3 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (161 aa) portion of the protein. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
GRIP-related ARF-binding domain-containing protein 1 (GDAP1); BEST Arabidopsis thaliana protein match is: golgin candidate 4 (TAIR:AT2G46180.1); Has 126642 Blast hits to 68271 proteins in 2953 species: Archae - 1677; Bacteria - 19686; Metazoa - 56998; Fungi - 11244; Plants - 6158; Viruses - 661; Other Eukaryotes - 30218 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22779637..22783642 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81728.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 712 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MWSSIENMKA NLHKIVLDVH EDDEEEDDLH KYGSANGVSN SDRRNSSGFR SVSRYSISNG IESPAHHEIE RYKAEIKKLQ ESESDIKALS VNYAALLREK 101: EDQISRLNQE NGSLKQNLTS TSAALKEART DISRGSNNYA IKGNNDQSPN RLHKSVSHLK SPNHMSNGKG KDTDSFIKEK DLADMLEDRT KSMAAVQATE 201: LAKEREKLRD FQLSLQEERK RSESFKEELE SMRLDKNKTS MEISKMRSEL DAKLLEIKHL QMKLTGQESH AIGPGMEHLK EVNKALEKEN NELKLKRSEL 301: EAALEESRKL TNSKVFPDAT ESLTRHPSTL DKEKPESFPG KEEMEQSLQR LEMDLKETQR ERDKARQELK RLKQHLLEKE TEESEKMDED SRLIEELRQT 401: NEYQRSQISH LEKSLKQAIS NQEDNRLSND NQIRKLKDTV DDLNQKLTNC LRTIESKNVE LLNLQTALGQ YYAEIEAKEH FERELAMAKD ELMKLSARLK 501: DSDERLESSN KEKEDVTSKL LHAEKVAAEW KNRVTKVEED NAKVRRVLEQ SMTRLNRMSM ESDYLVDRRI VIKLLVTYFQ KNHNKEVLDL MVRMLGFSEE 601: DKERIGAAKQ GGGKGVVRGV LGFPGRFVGG ILGGKSAELH ANAASDNQSF ADLWVDFLLK DAEERERREA EEAAASKAKQ DSERTRQEAA LHDSEFSTVP 701: LRSSESNQRL SR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)