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AT3G61450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.935
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15342965 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : syntaxin of plants 73
Curator
Summary (TAIR10)
syntaxin of plants 73 (SYP73)
Computational
Description (TAIR10)
syntaxin of plants 73 (SYP73); CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 71 (TAIR:AT3G09740.1); Has 361 Blast hits to 359 proteins in 120 species: Archae - 8; Bacteria - 14; Metazoa - 56; Fungi - 49; Plants - 132; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIQ9eggNOG:ENOG410XS1REMBL:AF355759EMBL:AL132962EMBL:CP002686EnsemblPlants:AT3G61450EnsemblPlants:AT3G61450.1
entrez:825318ExpressionAtlas:Q94KK5GeneID:825318Genevisible:Q94KK5GO:GO:0005622GO:GO:0006886GO:GO:0016021
GO:GO:0061025hmmpanther:PTHR19957hmmpanther:PTHR19957:SF129HOGENOM:HOG000241575InParanoid:Q94KK5InterPro:IPR000727InterPro:IPR006012
iPTMnet:Q94KK5PaxDb:Q94KK5Pfam:PF05739Pfam:Q94KK5Pfscan:PS50192PhylomeDB:Q94KK5PRIDE:Q94KK5
PRO:PR:Q94KK5PROSITE:PS00914PROSITE:PS50192ProteinModelPortal:Q94KK5Proteomes:UP000006548RefSeq:NP_567114.1scanprosite:PS00914
SMART:SM00397SMR:Q94KK5STRING:3702.AT3G61450.2SUPFAM:SSF58038TAIR:AT3G61450tair10-symbols:ATSYP73tair10-symbols:SYP73
TMHMM:TMhelixUniGene:At.19040UniProt:Q94KK5
Coordinates (TAIR10) chr3:+:22738455..22739953
Molecular Weight (calculated) 29819.50 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.48
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MGVIDLITRV DSICKKYEKY DINRQRDANV SGDDAFSRLY SAVEYALETV LQKTEDLSSE TNKAKAVAMN AEIRRTKARL LEGIPKLQRL SLKKVKGLSK
101: EELDARNDLV LSLRDKIEAI PESSAPVVGG WEASTSYSNI RFDTNVSDDR IGSEYFQPTG ESDQFKQEYE MKRIKQARLD YIAEGLDTLK NMAQDINEEL
201: DRQEPLMDEI DTKIDKAATD LKSTNVRLKD TVTKLRSSRN FCIDIILLCI LLGIAAFIYN SVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)