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AT3G61310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT2G45850.2); Has 861 Blast hits to 857 proteins in 59 species: Archae - 0; Bacteria - 6; Metazoa - 83; Fungi - 11; Plants - 756; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IR56eggNOG:ENOG410YDXWEMBL:AL137898EMBL:AY128386EMBL:BR000347EMBL:BT008837EMBL:CP002686
EnsemblPlants:AT3G61310EnsemblPlants:AT3G61310.1entrez:825303GeneID:825303Genevisible:Q8L7L5GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G61310.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF10HOGENOM:HOG000116506IntAct:Q8L7L5
InterPro:IPR005175InterPro:IPR017956iPTMnet:Q8L7L5KEGG:ath:AT3G61310OMA:THPETSIPaxDb:Q8L7L5Pfam:PF03479
Pfam:Q8L7L5Pfscan:PS51742PhylomeDB:Q8L7L5PIR:T47923PRIDE:Q8L7L5PRO:PR:Q8L7L5PROSITE:PS51742
ProteinModelPortal:Q8L7L5Proteomes:UP000006548RefSeq:NP_191690.2SMART:SM00384SMR:Q8L7L5STRING:3702.AT3G61310.1SUPFAM:SSF117856
TAIR:AT3G61310UniGene:At.48793UniGene:At.65801UniGene:At.71203UniProt:Q8L7L5
Coordinates (TAIR10) chr3:-:22690799..22692445
Molecular Weight (calculated) 36784.20 Da
IEP (calculated) 9.35
GRAVY (calculated) -0.37
Length 354 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRRDAMALS GSGSYYIQRG IPGSGPPPPQ TQPTFHGSQG FHHFTNSISP FGSNPNPNPN PGGVSTGFVS PPLPVDSSPA DSSAAAAGAL VAPPSGDTSV
101: KRKRGRPRKY GQDGGSVSLA LSPSISNVSP NSNKRGRGRP PGSGKKQRLS SIGEMMPSST GMSFTPHVIV VSIGEDIASK VISFSHQGPR AICVLSASGA
201: VSTATLLQPA PSHGTIIYEG LFELISLSTS YLNTTDNDYP NRTGSLAVSL ASPDGRVIGG GIGGPLIAAS QVQVIVGSFI WAIPKGKIKK REETSEDVQD
301: TDALENNNDN TAATSPPVPQ QSQNIVQTPV GIWSTGSRSM DMHHPHMDID LMRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)