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AT3G61240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DEA(D/H)-box RNA helicase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DEA(D/H)-box RNA helicase family protein; FUNCTIONS IN: helicase activity, ATP-dependent helicase activity, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT2G45810.1); Has 53038 Blast hits to 46572 proteins in 3157 species: Archae - 705; Bacteria - 22269; Metazoa - 8742; Fungi - 5746; Plants - 2904; Viruses - 84; Other Eukaryotes - 12588 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-146-MONOMERBioCyc:ARA:GQT-795-MONOMEREC:3.6.4.13eggNOG:ENOG410XRAZeggNOG:KOG0326EMBL:AJ010464EMBL:AL137898
EMBL:AY120712EMBL:BT000038EMBL:CP002686EnsemblPlants:AT3G61240EnsemblPlants:AT3G61240.1EnsemblPlants:AT3G61240.2entrez:825296
Gene3D:3.40.50.300GeneID:825296Genevisible:Q9M2E0GO:GO:0000932GO:GO:0003723GO:GO:0004386GO:GO:0005524
GO:GO:0006397GO:GO:0006417GO:GO:0051028Gramene:AT3G61240.1Gramene:AT3G61240.2hmmpanther:PTHR24031hmmpanther:PTHR24031:SF254
HOGENOM:HOG000268797InParanoid:Q9M2E0InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545InterPro:IPR014001InterPro:IPR014014
InterPro:IPR027417KEGG:ath:AT3G61240KO:K12614OMA:LAITKHTPaxDb:Q9M2E0Pfam:PF00270Pfam:PF00271
Pfam:Q9M2E0Pfscan:PS51192Pfscan:PS51194Pfscan:PS51195PhylomeDB:Q9M2E0PIR:T47916PIR:T51743
PRIDE:Q9M2E0PRO:PR:Q9M2E0PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194PROSITE:PS51195ProteinModelPortal:Q9M2E0
Proteomes:UP000006548Reactome:R-ATH-430039RefSeq:NP_191683.1RefSeq:NP_974472.1scanprosite:PS00039SMART:SM00487SMART:SM00490
SMR:Q9M2E0STRING:3702.AT3G61240.1SUPFAM:SSF52540SUPFAM:SSF81995TAIR:AT3G61240UniGene:At.20236UniProt:Q9M2E0
Coordinates (TAIR10) chr3:+:22666590..22669154
Molecular Weight (calculated) 56778.10 Da
IEP (calculated) 8.51
GRAVY (calculated) -0.50
Length 498 amino acids
Sequence (TAIR10)
(BLAST)
001: MNTNRGRYPP GVGTGRGAPP NPDYHQSYRQ QQPPQDQQYV QRGYSQNPQQ MQLQQQHQQQ QQQQQWSRRP QLPGNASNAN EVVQQTTQPE ASSDANGQDW
101: KATLRLPPPD TRYQTADVTA TKGNEFEDYF LKRDLLKGIY EKGFEKPSPI QEESIPIALT GSDILARAKN GTGKTGAFCI PVLEKIDPNN NVIQAMILVP
201: TRELALQTSQ VCKELSKYLN IQVMVTTGGT SLRDDIMRLH QPVHLLVGTP GRILDLTKKG VCVLKDCAML VMDEADKLLS AEFQPSLEEL IQFLPQNRQF
301: LMFSATFPVT VKAFKDRHLR KPYVINLMDQ LTLMGVTQYY AFVEERQKVH CLNTLFSKLQ INQSIIFCNS VNRVELLAKK ITELGYSCFY IHAKMVQDHR
401: NRVFHEFRNG ACRNLVCTDL FTRGIDIQAV NVVINFDFPR TSESYLHRVG RSGRFGHLGL AVNLVTYEDR FKMYQTEQEL GTEIKPIPSN IDQAIYCQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)