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AT3G60900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 16618929
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 12805588
TAIR : plasma membrane 16618929
TAIR : plasma membrane 17644812
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:24393051 (2015): extracellular region
  • PMID:22923678 (2012): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FASCICLIN-like arabinogalactan-protein 10
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FASCICLIN-like arabinogalactan-protein 10 (FLA10); LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: FAS1 domain (InterPro:IPR000782); BEST Arabidopsis thaliana protein match is: FASCICLIN-like arabinogalactan protein 8 (TAIR:AT2G45470.1); Has 12874 Blast hits to 6768 proteins in 802 species: Archae - 107; Bacteria - 3922; Metazoa - 1175; Fungi - 784; Plants - 2143; Viruses - 697; Other Eukaryotes - 4046 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJMZeggNOG:ENOG410YIMZEMBL:AF378882EMBL:AL162295EMBL:AY087634EMBL:CP002686EnsemblPlants:AT3G60900
EnsemblPlants:AT3G60900.1entrez:825261Gene3D:2.30.180.10GeneID:825261Genevisible:Q9LZX4GO:GO:0005886GO:GO:0031225
GO:GO:0046658Gramene:AT3G60900.1hmmpanther:PTHR32382hmmpanther:PTHR32382:SF5HOGENOM:HOG000240961InParanoid:Q9LZX4InterPro:IPR000782
InterPro:IPR033254KEGG:ath:AT3G60900OMA:EINTRQTPANTHER:PTHR32382PaxDb:Q9LZX4Pfam:PF02469Pfam:Q9LZX4
Pfscan:PS50213PhylomeDB:Q9LZX4PIR:T47901PRIDE:Q9LZX4PRO:PR:Q9LZX4PROSITE:PS50213ProteinModelPortal:Q9LZX4
Proteomes:UP000006548RefSeq:NP_191649.1SMART:SM00554STRING:3702.AT3G60900.1SUPFAM:SSF82153SwissPalm:Q9LZX4TAIR:AT3G60900
tair10-symbols:FLA10UniGene:At.34356UniGene:At.72597UniProt:Q9LZX4
Coordinates (TAIR10) chr3:-:22499573..22500841
Molecular Weight (calculated) 43609.70 Da
IEP (calculated) 5.63
GRAVY (calculated) 0.09
Length 422 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSRAFTLF AFTLSLLTVA STVSGHNITQ ILSDTPEYSS FNNYLSQTKL ADEINSRTTI TVLVLNNGAM SSLAGKHPLS VVKNALSLLV LLDYYDPLKL
101: HQLSKGTTLT TTLYQTTGHA LGNLGFVNVT DLKGGKVGFG SAAPGSKLDS SYTKSVKQIP YNISVLEINA PIIAPGILTA PAPSSAGVSN ITGLLEKAGC
201: KTFANLLVSS GVIKTFESTV EKGLTVFAPS DEAFKARGVP DLTNLTQAEV VSLLEYHALA EYKPKGSLKT NKDAISTLAT NGAGKYDLTT STSGDEVILH
301: TGVGPSRLAD TVVDETPVVI FTVDNVLLPA ELFGKSSSPA PAPEPVSAPT PTPAKSPSPV EAPSPTAASP PAPPVDESSP EGAPSDSPTS SENSNAKNAA
401: FHVNAPALFT ALVTIAATSL LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)