AT3G60860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SEC7-like guanine nucleotide exchange family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SEC7-like guanine nucleotide exchange family protein; FUNCTIONS IN: binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity; INVOLVED IN: regulation of ARF protein signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SEC7-like (InterPro:IPR000904), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF1981, SEC7 associated (InterPro:IPR015403); BEST Arabidopsis thaliana protein match is: SEC7-like guanine nucleotide exchange family protein (TAIR:AT1G01960.1); Has 2962 Blast hits to 2694 proteins in 246 species: Archae - 0; Bacteria - 33; Metazoa - 1475; Fungi - 672; Plants - 315; Viruses - 0; Other Eukaryotes - 467 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22484804..22491510 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 199643.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.20 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1793 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MASSEADSRL SRVVTPALEK IVKNASWRKH SKLANECKAV IERLNSLQKS PPPSSSAATD SESESSVPGP LNDGGSIEYS LADSELIFSP LINACGTGLA 0101: KIIEPAIDCI QKLIAHGYIR GESDPSGGAE SLLLFKLIDS VCKCHDLGDE SIELPVLKTL LSAINSISLR IHGKCLLLVV RTCYDIYLGS KNVVNQTTAK 0201: ASLIQILVIV FRRMEADSST VPIQPIVVAE LMEPLEKSDA DGTMTQFVQG FITKIMQDID GVLNPTMSGS GSGSGSGGQD GAYGTTTVET TNPTDLLDST 0301: DKDMLDAKYW EISMYKSALE GRKGELTDGD AERDDDLEVQ IENKLRRDAC LVFRALCKLS MKAPPKESSA DPQSMRGKIL ALELLKILLE NAGAVFRTSE 0401: KFSADIKQFL CLSLLKNSAS TLMIIFQLSC SIFISLVARF RAGLKAEIGV FFPMIVLRVV ENVAQPNFQQ KMIVLRFLDK LCLDSQILVD IFLNYDCDVN 0501: SSNIFERMVN GLLKTAQGVP PGTATTLMPP QEAAMKLEAM KCLVAILKSM GDWLNKQLRL PVSNSLNKSD VIEIDLGPGS PQLANGNADE SADGSDTYSE 0601: SSGGTSDALA IEQRRAYKLE LQEGISLFNR KPTKGIEFLI NAGKVGESPE EIAGFLKDAS GLNKTLIGDY LGEREDLALK VMHAYVDSFD FRGMEFDEAI 0701: RTFLEGFRLP GEAQKIDRIM EKFAERYCKC NPKVFTSADS AYVLAYSVIM LNTDAHNPMV KNKMSADDFI RNNRGIDDGK DLPADYMRSL YERITKHEIK 0801: MKEDDLRLQQ KQYANSNRML GLDGILNIVI RKQWGDSYAE TSDDLMKHMQ EQFKEKARKS ESTYYAATDV VILRFMIEAC WAPMLAAFSV PLDQSDDLIV 0901: INICLEGFHH AIHATSLMSM KTHRDAFVTS LAKFTSLHSP ADIKQRNIEA IKAILRLADE EGNYLQDAWE HILTCVSRFE QLHLLGEGAP PDATFFASKQ 1001: NESEKSKQPK QYILPVLKRK GPGKSQYAAT GVLRGSYDSM SLGGKGSKNV RQEQMSSIVS NLNLLEQVGE MNQVFSQSQK LNSEAIIDFV KALCKVSMDE 1101: LRSPSNPRVF SLTKIVEIAH YNMNRIRLVW SSIWQVLSGF FVTIGCSENL SIAIFAMDSL RQLSMKFLER EELANYNFQN EFMTPFVIVM RRSNDVEIRE 1201: LIIRCVSQMV LSRVNNVKSG WKSMFMVFTT AAYDDHKNIV FLSFEIIEKI IREYFPYITE TETTTFTDCV NCLVAFTNNR FSKDISLSSI AFLRYCATKL 1301: AEGDLNSPST NKYKGTSGKI PQSSLHSGKS GKQENGEIVN NNHLYFWFPL LSGLSELSFD PRPEIRKSAL QIMFDTLRNH GHLFSLPLWE KVFESVLFPI 1401: FDYVRHSIDP SGEDESADQG SSGGEVDELD HDAWLYETCT LALQLVVDLF VKFYTTVNPL LEKVLMLLVS FIKRPHQSLA GIGIAAFVRL MSDADGLFSE 1501: EKWLEVVSAL KEAAKTTCPD FSYFLSEEYV ARSQRSALNI QNSNAESAAP TATDGNEESQ RTATHLYAAI SDAKCRAAVQ LLLIQAVMEI YNMYRPQLSA 1601: KNTLVLVDAL HGVALHAHGI NSNTILRSRL QELGPMTQMQ DPPLLRLENE SYQICLTFLQ NLVADKTKKE EEEEEEEIES LLVNICQEVL NFYIETSSSA 1701: KKLQSESSRA SEYRWRIPLG SGKRRELSAR APLIVATLQA MCTLDEASFE KNLKCLFPLL ANLISCEHGS NEVQTALADM LGLSVGPVLL QWC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)