AT3G60850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; Has 42 Blast hits to 42 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22482053..22483999 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 72918.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.32 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||
| Length | 648 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNTHKTEEGL FHHHDLDPTA DILVQSPPSI LHHHHDHNSE VDPAFSLPEF ILFRSSPSGD SPGLSSDEQD DSLTGNPQIA DSSNSRVSSA GRDGLFISPD 101: PHISSQFYTF NAASHSLMCR CLREGRLATP AEIRIATPRS VLKSWRAVWK DRNEETAYLT AWKRIQDKLT SRLDPATGNE FLCFKNNSQQ FVSHINQWQD 201: IVMGFHADGD LKHLGQKETI DRIKQVWTVG AKLYGIPESF IRVCVAACPV CNADSGSASR NKRRRFEYTE SLDVPAKEVP DRLQQLAAKH KVVLCIRQKY 301: IRYKPFMAEV KDYACHRAGE PVSIKKSRIL KREPYQSKRC GCGFRIRAIV PIANYSEKTK TFVYQEEGTA VFKLYAVHSG HEPGAMDGNA RIMHRVVGHK 401: GFLMDQETVY GVRDEDVETE GMGLTGKDER AEMQFTVLHQ VQELRSELGT LEGKIGNFSQ EMLGSVSTEL FEMLNKIRNI GVESAQDTTG LVAEKSHSDE 501: ILVGDNDLVH WSDHHHEHLY GDGKDAELIE DDEDSFERSL DDVVPWEQIT PPSDCTNQKE DLLSETCKPE KWLKCNDFDE NSILNSEDSK LTKPMSHDGG 601: SIETDVGLAG IQVDSFYQEN SKWYDSPCGL DSNTDGEDTG FSRHGEIL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)