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AT3G60820.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Curator
Summary (TAIR10)
Encodes 20S proteasome beta subunit PBF1 (PBF1).
Computational
Description (TAIR10)
PBF1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: defense response to fungus, incompatible interaction, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: proteasome beta subunit C1 (TAIR:AT1G21720.1); Has 4354 Blast hits to 4354 proteins in 444 species: Archae - 499; Bacteria - 50; Metazoa - 1642; Fungi - 1076; Plants - 489; Viruses - 0; Other Eukaryotes - 598 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G60820-MONOMERBioCyc:ARA:GQT-2159-MONOMERBioCyc:ARA:GQT-2160-MONOMERBioGrid:10567EC:3.4.25.1eggNOG:COG0638eggNOG:KOG0179
EMBL:AF043537EMBL:AK220787EMBL:AL162295EMBL:AY062790EMBL:AY081571EMBL:AY086619EMBL:CP002686
EMBL:X67338EMBL:X79806EMBL:Z26405EnsemblPlants:AT3G60820EnsemblPlants:AT3G60820.1EnsemblPlants:AT3G60820.3entrez:825253
ExpressionAtlas:P42742Gene3D:3.60.20.10GeneID:825253Genevisible:P42742GO:GO:0000502GO:GO:0004298GO:GO:0005634
GO:GO:0005829GO:GO:0005839GO:GO:0005886GO:GO:0009507GO:GO:0009817GO:GO:0048046GO:GO:0051603
hmmpanther:PTHR11599hmmpanther:PTHR11599:SF59HOGENOM:HOG000091081InParanoid:P42742IntAct:P42742InterPro:IPR001353InterPro:IPR016050
InterPro:IPR023333InterPro:IPR029055iPTMnet:P42742merops:T01.986MINT:MINT-8065646PaxDb:P42742Pfam:P42742
Pfam:PF00227Pfscan:PS51476PhylomeDB:P42742PIR:T47893PRIDE:P42742PRO:PR:P42742PROSITE:PS00854
PROSITE:PS51476ProteinModelPortal:P42742Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_001190146.1RefSeq:NP_191641.1scanprosite:PS00854SMR:P42742
STRING:3702.AT3G60820.1SUPFAM:SSF56235TAIR:AT3G60820tair10-symbols:PBF1UniGene:At.20500UniGene:At.48789UniProt:P42742
Coordinates (TAIR10) chr3:-:22472038..22473809
Molecular Weight (calculated) 24645.40 Da
IEP (calculated) 7.49
GRAVY (calculated) -0.26
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKQHANWSP YDNNGGTCVA IAGSDYCVIA ADTRMSTGYS ILSRDYSKIH KLADRAVLSS SGFQADVKAL QKVLKSRHLI YQHQHNKQMS CPAMAQLLSN
101: TLYFKRFFPY YAFNVLGGLD EEGKGCVFTY DAVGSYERVG YGAQGSGSTL IMPFLDNQLK SPSPLLLPKQ DSNTPLSEAE AVDLVKTVFA SATERDIYTG
201: DKLEIMILKA DGIKTELMDL RKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)