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AT3G60800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.798
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22430844 (2012): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DHHC-type zinc finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DHHC-type zinc finger family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, DHHC-type (InterPro:IPR001594); BEST Arabidopsis thaliana protein match is: DHHC-type zinc finger family protein (TAIR:AT4G22750.1); Has 5091 Blast hits to 5089 proteins in 250 species: Archae - 0; Bacteria - 0; Metazoa - 2186; Fungi - 767; Plants - 823; Viruses - 0; Other Eukaryotes - 1315 (source: NCBI BLink).
Protein Annotations
BioGrid:10565BRENDA:2.3.1.225EC:2.3.1.225eggNOG:COG5273eggNOG:KOG1315EMBL:AK229274EMBL:AL162295
EMBL:AY070381EMBL:AY096574EMBL:CP002686EnsemblPlants:AT3G60800EnsemblPlants:AT3G60800.1entrez:825251GeneID:825251
Genevisible:Q8VYP5GO:GO:0000138GO:GO:0005794GO:GO:0008270GO:GO:0010150GO:GO:0016021GO:GO:0019706
GO:GO:0019707GO:GO:2000377Gramene:AT3G60800.1hmmpanther:PTHR22883hmmpanther:PTHR22883:SF66HOGENOM:HOG000234777InParanoid:Q8VYP5
IntAct:Q8VYP5InterPro:IPR001594KEGG:ath:AT3G60800OMA:ANEDMEAPaxDb:Q8VYP5Pfam:PF01529Pfam:Q8VYP5
Pfscan:PS50216PhylomeDB:Q8VYP5PIR:T47891PRIDE:Q8VYP5PRO:PR:Q8VYP5PROSITE:PS50216ProteinModelPortal:Q8VYP5
Proteomes:UP000006548RefSeq:NP_191639.2STRING:3702.AT3G60800.1SwissPalm:Q8VYP5TAIR:AT3G60800TMHMM:TMhelixUniGene:At.27704
UniProt:Q8VYP5
Coordinates (TAIR10) chr3:-:22467486..22469273
Molecular Weight (calculated) 34690.30 Da
IEP (calculated) 7.44
GRAVY (calculated) 0.21
Length 307 amino acids
Sequence (TAIR10)
(BLAST)
001: MHRSGTTMAW NVFKFCTALR GLGSIMILLV LGVVGVTYYA VVLTNYGPAL SQGGLDSLAA LTILILFHFL LAMLLWSYFS VVFTDPGVVP PNWRPSTDEE
101: RGESDPLNSL DFVGLQSDSS SSNPRVRFCR KCNQLKPSRC HHCSVCGRCV LKMDHHCVWV VNCVGALNYK YFLLFLFYTF LETTLVTLVL MPHFIAFFSD
201: EEIPGTPGTL ATTFLAFVLN LAFALSVMGF LIMHISLVAG NTTTIEAYEK KTTTKWRYDL GKKKNFEQVF GMDKRYWLIP GYTEEDLRRM PELQGLEYPS
301: KPDFDSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)