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AT3G60750.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:30394608 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23225155 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transketolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transketolase; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, bacterial-like (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826); BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT2G45290.1); Has 19296 Blast hits to 19203 proteins in 2759 species: Archae - 202; Bacteria - 11440; Metazoa - 321; Fungi - 314; Plants - 204; Viruses - 0; Other Eukaryotes - 6815 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G60750-MONOMERBioCyc:ARA:GQT-437-MONOMERBioGrid:10560EC:2.2.1.1
eggNOG:COG0021eggNOG:KOG0523EMBL:AF424631EMBL:AK317159
EMBL:AL162295EMBL:AY085542EMBL:AY091094EMBL:AY133860
EMBL:BT000604EMBL:BT003331EMBL:CP002686EnsemblPlants:AT3G60750
EnsemblPlants:AT3G60750.1entrez:825246ExpressionAtlas:Q8RWV0Gene3D:3.40.50.920
Gene3D:3.40.50.970GeneID:825246Genevisible:Q8RWV0GO:GO:0004802
GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570
GO:GO:0009651GO:GO:0009941GO:GO:0019253GO:GO:0046686
GO:GO:0046872gramene_pathway:2.2.1.1gramene_pathway:CALVIN-PWYgramene_pathway:NONOXIPENT-PWY
gramene_pathway:PWY-5723gramene_pathway:RIBOKIN2-PWYgramene_plant_reactome:1119519gramene_plant_reactome:6877178
gramene_plant_reactome:6877216hmmpanther:PTHR11624hmmpanther:PTHR11624:SF81HOGENOM:HOG000225954
InParanoid:Q8RWV0IntAct:Q8RWV0InterPro:IPR005474InterPro:IPR005475
InterPro:IPR005478InterPro:IPR009014InterPro:IPR020826InterPro:IPR029061
InterPro:IPR033247InterPro:IPR033248iPTMnet:Q8RWV0KEGG:00030+2.2.1.1
KEGG:00710+2.2.1.1KEGG:00730+2.2.1.7KEGG:00900+2.2.1.7OMA:GDLINHY
PANTHER:PTHR11624PaxDb:Q8RWV0Pfam:PF00456Pfam:PF02779
Pfam:PF02780Pfam:Q8RWV0PhylomeDB:Q8RWV0PIR:T47886
PRIDE:Q8RWV0PRO:PR:Q8RWV0ProMEX:Q8RWV0PROSITE:PS00801
PROSITE:PS00802ProteinModelPortal:Q8RWV0Proteomes:UP000006548Reactome:R-ATH-163754
Reactome:R-ATH-71336RefSeq:NP_567103.1scanprosite:PS00801scanprosite:PS00802
SMART:SM00861SMR:Q8RWV0STRING:3702.AT3G60750.1SUPFAM:SSF52518
SUPFAM:SSF52922TAIR:AT3G60750TIGRfam:TIGR00232TIGRFAMs:TIGR00232
UniGene:At.24156UniGene:At.68080unipathway:UPA00064UniPathway:UPA00116
UniProt:Q8RWV0
Coordinates (TAIR10) chr3:+:22454004..22456824
Molecular Weight (calculated) 79972.60 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.24
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)