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AT3G60750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:25740923 (2015): plastid
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18433418 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transketolase
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transketolase; FUNCTIONS IN: catalytic activity, transketolase activity; INVOLVED IN: response to cadmium ion, response to salt stress; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, bacterial-like (InterPro:IPR005478), Transketolase, N-terminal (InterPro:IPR005474), Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475), Transketolase binding site (InterPro:IPR020826); BEST Arabidopsis thaliana protein match is: Transketolase (TAIR:AT2G45290.1); Has 19296 Blast hits to 19203 proteins in 2759 species: Archae - 202; Bacteria - 11440; Metazoa - 321; Fungi - 314; Plants - 204; Viruses - 0; Other Eukaryotes - 6815 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G60750-MONOMERBioCyc:ARA:GQT-437-MONOMERBioGrid:10560EC:2.2.1.1eggNOG:COG0021eggNOG:KOG0523EMBL:AF424631
EMBL:AK317159EMBL:AL162295EMBL:AY085542EMBL:AY091094EMBL:AY133860EMBL:BT000604EMBL:BT003331
EMBL:CP002686EnsemblPlants:AT3G60750EnsemblPlants:AT3G60750.1entrez:825246ExpressionAtlas:Q8RWV0Gene3D:3.40.50.920Gene3D:3.40.50.970
GeneID:825246Genevisible:Q8RWV0GO:GO:0004802GO:GO:0009507GO:GO:0009535GO:GO:0009536GO:GO:0009570
GO:GO:0009651GO:GO:0009941GO:GO:0019253GO:GO:0046686GO:GO:0046872gramene_pathway:2.2.1.1gramene_pathway:CALVIN-PWY
gramene_pathway:NONOXIPENT-PWYgramene_pathway:PWY-5723gramene_pathway:RIBOKIN2-PWYgramene_plant_reactome:1119519gramene_plant_reactome:6877178gramene_plant_reactome:6877216hmmpanther:PTHR11624
hmmpanther:PTHR11624:SF81HOGENOM:HOG000225954InParanoid:Q8RWV0IntAct:Q8RWV0InterPro:IPR005474InterPro:IPR005475InterPro:IPR005478
InterPro:IPR009014InterPro:IPR020826InterPro:IPR029061InterPro:IPR033247InterPro:IPR033248iPTMnet:Q8RWV0KEGG:00030+2.2.1.1
KEGG:00710+2.2.1.1KEGG:00730+2.2.1.7KEGG:00900+2.2.1.7OMA:GDLINHYPANTHER:PTHR11624PaxDb:Q8RWV0Pfam:PF00456
Pfam:PF02779Pfam:PF02780Pfam:Q8RWV0PhylomeDB:Q8RWV0PIR:T47886PRIDE:Q8RWV0PRO:PR:Q8RWV0
ProMEX:Q8RWV0PROSITE:PS00801PROSITE:PS00802ProteinModelPortal:Q8RWV0Proteomes:UP000006548Reactome:R-ATH-163754Reactome:R-ATH-71336
RefSeq:NP_567103.1scanprosite:PS00801scanprosite:PS00802SMART:SM00861SMR:Q8RWV0STRING:3702.AT3G60750.1SUPFAM:SSF52518
SUPFAM:SSF52922TAIR:AT3G60750TIGRfam:TIGR00232TIGRFAMs:TIGR00232UniGene:At.24156UniGene:At.68080unipathway:UPA00064
UniPathway:UPA00116UniProt:Q8RWV0
Coordinates (TAIR10) chr3:+:22454004..22456824
Molecular Weight (calculated) 79972.60 Da
IEP (calculated) 6.32
GRAVY (calculated) -0.24
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTSSLALS QALLARAISH HGSDQRGSLP AFSGLKSTGS RASASSRRRI AQSMTKNRSL RPLVRAAAVE TVEPTTDSSI VDKSVNSIRF LAIDAVEKAK
101: SGHPGLPMGC APMAHILYDE VMRYNPKNPY WFNRDRFVLS AGHGCMLLYA LLHLAGYDSV QEEDLKQFRQ WGSKTPGHPE NFETPGIEVT TGPLGQGIAN
201: AVGLALAEKH LAARFNKPDA EVVDHYTYAI LGDGCQMEGI SNEACSLAGH WGLGKLIAFY DDNHISIDGD TEIAFTENVD QRFEALGWHV IWVKNGNTGY
301: DEIRAAIKEA KTVTDKPTLI KVTTTIGYGS PNKANSYSVH GAALGEKEVE ATRNNLGWPY EPFQVPDDVK SHWSRHTPEG ATLESDWSAK FAAYEKKYPE
401: EASELKSIIT GELPAGWEKA LPTYTPESPG DATRNLSQQC LNALAKVVPG FLGGSADLAS SNMTLLKAFG DFQKATPEER NLRFGVREHG MGAICNGIAL
501: HSPGLIPYCA TFFVFTDYMR GAMRISALSE AGVIYVMTHD SIGLGEDGPT HQPIEHIASF RAMPNTLMFR PADGNETAGA YKIAVTKRKT PSILALSRQK
601: LPHLPGTSIE GVEKGGYTIS DDSSGNKPDV ILIGTGSELE IAAQAAEVLR KDGKTVRVVS FVCWELFDEQ SDEYKESVLP SDVSARVSIE AASTFGWGKI
701: VGGKGKSIGI NSFGASAPAP LLYKEFGITV EAVVDAAKSF F
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)