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AT3G60740.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
golgi 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARM repeat superfamily protein
Curator
Summary (TAIR10)
Encodes tubulin-folding cofactor D. Mutants arrest during embryogenesis with embryos that are small, mushroom-shaped ('pilz') and consist of only one or few large cells each containing one or more variably enlarged nuclei and often cell wall stubs. Gene product necessary for continuous microtubule organization.
Computational
Description (TAIR10)
TITAN 1 (TTN1); CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5234eggNOG:KOG1943EMBL:AF486851EMBL:AL162295
EMBL:CP002686EnsemblPlants:AT3G60740EnsemblPlants:AT3G60740.1entrez:825245
Gene3D:1.25.10.10GeneID:825245Genevisible:Q8L5R3GO:GO:0000226
GO:GO:0005096GO:GO:0005829GO:GO:0005874GO:GO:0006457
GO:GO:0007017GO:GO:0007021GO:GO:0007023GO:GO:0009506
GO:GO:0009793GO:GO:0015631GO:GO:0043547GO:GO:0048487
Gramene:AT3G60740.1hmmpanther:PTHR12658hmmpanther:PTHR12658:SF0HOGENOM:HOG000231203
InParanoid:Q8L5R3InterPro:IPR011989InterPro:IPR016024InterPro:IPR022577
InterPro:IPR033162KEGG:ath:AT3G60740OMA:IVNAADYPANTHER:PTHR12658:SF0
PaxDb:Q8L5R3Pfam:PF12612Pfam:Q8L5R3PhylomeDB:Q8L5R3
PIR:T47885PRIDE:Q8L5R3PRO:PR:Q8L5R3ProteinModelPortal:Q8L5R3
Proteomes:UP000006548RefSeq:NP_191633.3SMR:Q8L5R3STRING:3702.AT3G60740.1
SUPFAM:SSF48371TAIR:AT3G60740tair10-symbols:CHOtair10-symbols:EMB133
tair10-symbols:TFC Dtair10-symbols:TTN1UniGene:At.27841UniGene:At.43228
UniProt:Q8L5R3
Coordinates (TAIR10) chr3:-:22447385..22453325
Molecular Weight (calculated) 139923.00 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.02
Length 1254 amino acids
Sequence (TAIR10)
(BLAST)
0001: MASRAEEMSP TKIEIETAVK IEEEEDDEHD SKERVLQRYF LQEWKLVKSL LDDIVSNGRV VDPTSVHKIR SIMDKYQEQG QLVEPYLESI VSPLMFIIRS
0101: KTVDLEAKPD EILEIIKPIS IIIYALVTVC GYKAVIKFFP HQVSDLELAV LLLEKCHSTN SVSALRQEST GEMEAKCVTL LWLSILVLVP FDISSVDTSI
0201: ADDKTFGVDD LAPLVLKILG FCKDYLCSAG PMRRISGLLL SKLLTRPDMG KAFSSFFEWT YEVLSCKEDS VTNHFRLLGV MEALSAIFKT ASRKVLLDVL
0301: PIVLNDVTVL SKSNAAAKSS LLRKYLIKLT QRIGLVCLPH RSPSWRYVAQ TASLSENMST SSSQRLAPDH TVTAILQPES LDDQEDEDMD VPEILEEIIE
0401: MLLSGLRDTD TVVRWSAAKG IGRVTSRLTS VLSDEVLSSV LELFSPGEGD GSWHGGCLAL AELARRGLLL PRSFPLVVPV IVKALHYDVR RGPHSVGSHV
0501: RDAAAYVCWA FGRAYSHKDM KNVLDQLAPD LLIVGSFDRE VNCRRAAAAA FQENVGRQGN YPHGIDIVSI ADYFSLSSRV NSYLQVAVSI AQYEGYLYPF
0601: VDELLYNKIC HWDKSLRELA AEALAPLVKY EPKHFANYVL EKLIPCTLST DLCMRHGATL AAGEVVLALH QCGYVLSADS QKRMAGIVPS IEKARLYRGK
0701: GGEIMRLAVS RFIECISLSH VTLAERTERI LLDTLTENLR HPNSQIQNAA VSAVKQLVQS YLVGNDKKSV DLILKHLKHL TDPNVAVRRG SALALGVLPY
0801: ELLTAKWKDI VLKLCSACKI EVNPEDRDAE ARVNAVKGLT SVCETLTQKR ASDPGNDDLS LFLLIKTEVM DTLLKALDDY SVDNRGDVGS WVREAAVHGL
0901: EKCTYILCKK METYSEGDYN DDTSSLFDSN LATRLIGGML KQGVEKMDKL RETAAKVLQR ILYHKSVSVP HVPYREKLEE ILPNKANLQW AVPAFSFPRF
1001: VQLLKLRCYS KEVMSGLVIS IGGLQDSLRK ASLVALLEYM REGEAKDPKE QQSRESALGD DILWILQEYK KCDRVMVPCL QTIEILFSSK IFLNQESYTF
1101: SFYAGVMDSL AIELRASKDF TKLKAGLAIL GYIASVSHFI STKAFSQLLS FLGHRYPMIR KAAAEQVYLA LLQNGILVTE EKMEKVIEII SESCWEADME
1201: TTKTQRLELC ELAGLDHEVV FKTRNRLVIK DIAGNKSAAD ENASYSSLVD SSGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)