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AT3G60570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : expansin B5
Curator
Summary (TAIR10)
member of BETA-EXPANSINS. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)
Computational
Description (TAIR10)
expansin B5 (EXPB5); INVOLVED IN: plant-type cell wall modification involved in multidimensional cell growth, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin B4 (TAIR:AT2G45110.1); Has 1985 Blast hits to 1982 proteins in 144 species: Archae - 0; Bacteria - 10; Metazoa - 1; Fungi - 27; Plants - 1928; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT9QeggNOG:ENOG4110824EMBL:AL138646EMBL:CP002686EnsemblPlants:AT3G60570EnsemblPlants:AT3G60570.1entrez:825228
Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:825228Genevisible:Q9M203GO:GO:0005576GO:GO:0005618GO:GO:0016020
GO:GO:0019953GO:GO:0071555Gramene:AT3G60570.1hmmpanther:PTHR31692hmmpanther:PTHR31692:SF3InParanoid:Q9M203InterPro:IPR005795
InterPro:IPR007112InterPro:IPR007117InterPro:IPR007118InterPro:IPR009009iPTMnet:Q9M203KEGG:ath:AT3G60570PaxDb:Q9M203
Pfam:PF01357Pfam:PF03330Pfam:Q9M203Pfscan:PS50842Pfscan:PS50843PhylomeDB:Q9M203PIR:T47868
PRIDE:Q9M203PRINTS:PR00829PRINTS:PR01225PRO:PR:Q9M203PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:Q9M203
Proteomes:UP000006548RefSeq:NP_191616.1SMART:SM00837SMR:Q9M203STRING:3702.AT3G60570.1SUPFAM:SSF49590SUPFAM:SSF50685
TAIR:AT3G60570tair10-symbols:ATEXPB5tair10-symbols:ATHEXP BETA 1.3tair10-symbols:EXPB5UniGene:At.50296UniProt:Q9M203
Coordinates (TAIR10) chr3:+:22391247..22392463
Molecular Weight (calculated) 27288.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.18
Length 252 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSLKCFS FIVVLTTFFA ISLKPCYCHN KTHWNTAGIT WYGDREGPGT TGGACGYGDA VAKHPYRCMV SAGGPSLFKD GKGCGACYRL KCDHPLCTKK
101: PIKVMISDEC PGCTKESVHF DLSGKAFGAL AKRGKGDQLR NLGELKTMIA IHVDAGANPY YMSFAVKFAN GDGNFACIEV QPAGGQYMKM EEMRSAVWRL
201: SPGVPLKGPF NIRLTSAVSG KKIIAKGVIP EKWSPGAIYH SKVNFPVQRK QK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)