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AT3G60520.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J25YeggNOG:ENOG410YYS8EMBL:AK227924EMBL:AL138646
EMBL:BT004575EMBL:CP002686EnsemblPlants:AT3G60520EnsemblPlants:AT3G60520.1
entrez:825223GeneID:825223Gramene:AT3G60520.1hmmpanther:PTHR33779
hmmpanther:PTHR33779:SF2HOGENOM:HOG000239181KEGG:ath:AT3G60520OMA:ATHRSEY
PhylomeDB:Q9M207PIR:T47863Proteomes:UP000006548RefSeq:NP_191611.1
SMR:Q9M207TAIR:AT3G60520UniGene:At.34431UniProt:Q9M207
Coordinates (TAIR10) chr3:-:22361751..22362467
Molecular Weight (calculated) 14618.40 Da
IEP (calculated) 9.01
GRAVY (calculated) -0.77
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDLERRVCC MCGDVGFFDK LFHCSKCLNR FQHSYCSSYY KEQADPIKIC DWCQCEAKSR TGAKHGVNGG SSKRSYRSEY SSPHHQIKQQ EINQTTSSSI
101: PPAADKGKTG VPSPRPATRR YKLLKDVMC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)