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AT3G60500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : 3'-5'-exoribonuclease family protein
Curator
Summary (TAIR10)
Encodes a 3'-5' exoribonuclease, positively regulates CER3 transcription, involved in cuticular wax biosynthesis.
Computational
Description (TAIR10)
ECERIFERUM 7 (CER7); CONTAINS InterPro DOMAIN/s: Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568); BEST Arabidopsis thaliana protein match is: ribonuclease PH45A (TAIR:AT3G12990.3); Has 1195 Blast hits to 1195 proteins in 321 species: Archae - 243; Bacteria - 19; Metazoa - 358; Fungi - 187; Plants - 157; Viruses - 0; Other Eukaryotes - 231 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1782-MONOMERBioCyc:ARA:GQT-1783-MONOMERBioCyc:ARA:GQT-1784-MONOMERBioGrid:10535eggNOG:COG2123eggNOG:KOG1614EMBL:AL138646
EMBL:BT004196EMBL:BT005701EMBL:CP002686EMBL:DQ869270EnsemblPlants:AT3G60500EnsemblPlants:AT3G60500.1EnsemblPlants:AT3G60500.2
EnsemblPlants:AT3G60500.3entrez:825221Gene3D:3.30.230.70GeneID:825221Genevisible:Q9M209GO:GO:0000175GO:GO:0000176
GO:GO:0000177GO:GO:0000467GO:GO:0005634GO:GO:0005737GO:GO:0017091GO:GO:0034427GO:GO:0034473
GO:GO:0034475GO:GO:0034476GO:GO:0043928GO:GO:0071028GO:GO:0071035GO:GO:0071038GO:GO:0071042
Gramene:AT3G60500.1Gramene:AT3G60500.2Gramene:AT3G60500.3hmmpanther:PTHR11097hmmpanther:PTHR11097:SF14HOGENOM:HOG000229504IntAct:Q9M209
InterPro:IPR001247InterPro:IPR015847InterPro:IPR020568InterPro:IPR027408InterPro:IPR033100iPTMnet:Q9M209KEGG:ath:AT3G60500
KO:K03678OMA:KEAACLDPANTHER:PTHR11097:SF14PaxDb:Q9M209Pfam:PF01138Pfam:PF03725Pfam:Q9M209
PhylomeDB:Q9M209PIR:T47861PRIDE:Q9M209PRO:PR:Q9M209ProteinModelPortal:Q9M209Proteomes:UP000006548Reactome:R-ATH-429958
Reactome:R-ATH-450604RefSeq:NP_001190143.1RefSeq:NP_191609.1RefSeq:NP_974466.1SMR:Q9M209STRING:3702.AT3G60500.1SUPFAM:SSF54211
SUPFAM:SSF55666TAIR:AT3G60500tair10-symbols:CER7tair10-symbols:G3UniGene:At.34436UniProt:Q9M209
Coordinates (TAIR10) chr3:+:22354245..22356440
Molecular Weight (calculated) 48298.60 Da
IEP (calculated) 6.86
GRAVY (calculated) -0.48
Length 438 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGRLANMWR LTVNESKFVE TALQSELRVD GRGLYDYRKL TIKFGKEYGS SEVQLGQTHV MGFVTAQLVQ PYKDRPNEGS LSIFTEFSPM ADPSFEPGRP
101: GESAVELGRI IDRGLRESRA VDTESLCVLA GKMVWSVRID LHILDNGGNL VDAANIAALA ALMTFRRPDC TVGGENGQEV IIHPLEEREP LPLIIHHLPI
201: AFTFGFFNKG NIVVMDPTYV EEAVMCGRMT VTVNANGDIC AIQKPGEEGV NQSVILHCLR LASSRAAATT KIIREEVEAY NCERSLQKVK RHPTLAKSEV
301: SGPTVAVKEE HRKSSDQERA AEISREHVER LKLSTEEVRS SKEEEAANFK GGPSNWDPYS EAMDVDSLKV SLASRGDPVT KSSSTKKMNG SGNAQKVGVE
401: ISVEEVTGEL GKKDTKHKDG EMTLKDAVKP KKKRKNKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)