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AT3G60360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : embryo sac development arrest 14
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
EMBRYO SAC DEVELOPMENT ARREST 14 (EDA14); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: megagametogenesis; LOCATED IN: small-subunit processome; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp11 (InterPro:IPR007144); Has 434 Blast hits to 428 proteins in 209 species: Archae - 4; Bacteria - 1; Metazoa - 127; Fungi - 141; Plants - 59; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).
Protein Annotations
BioGrid:10521eggNOG:COG5223eggNOG:KOG3237EMBL:AL138646EMBL:AY039876EMBL:AY085156EMBL:AY101514
EMBL:BT000725EMBL:CP002686EnsemblPlants:AT3G60360EnsemblPlants:AT3G60360.1entrez:825207GeneID:825207Genevisible:Q9M223
GO:GO:0005730GO:GO:0006364GO:GO:0009561GO:GO:0032040Gramene:AT3G60360.1hmmpanther:PTHR12838HOGENOM:HOG000231076
InParanoid:Q9M223IntAct:Q9M223InterPro:IPR007144iPTMnet:Q9M223KEGG:ath:AT3G60360KO:K14769OMA:FNFKMIN
PANTHER:PTHR12838PaxDb:Q9M223Pfam:PF03998Pfam:Q9M223PhylomeDB:Q9M223PIR:T47847PIRSF:PIRSF015952
PRIDE:Q9M223PRO:PR:Q9M223Proteomes:UP000006548RefSeq:NP_191595.1STRING:3702.AT3G60360.1TAIR:AT3G60360tair10-symbols:EDA14
tair10-symbols:UTP11UniGene:At.1231UniProt:Q9M223
Coordinates (TAIR10) chr3:-:22312477..22314002
Molecular Weight (calculated) 27150.60 Da
IEP (calculated) 10.59
GRAVY (calculated) -1.32
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSLRNAIPR PAHKERSQPE ARKRFGILEK HKDYIIRANA YHKKQETLKI LRQKAAFKNP DEFNFKMINS KTVDGRHRPK DEVNKYSAEE LMIMKTQDIG
101: YVFQKWQSEK NKIDKLTASL QCTGDQSSRR HVYYAEDREE ARELEVQGRS KSDISTVEIP KDIKKKMDRS YRDLEGRKSR AKDLEKLYTD MSMQKELQKK
201: GRKRKLRDDE LLNPNGKAVY KWRADRKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)