AT3G60350.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ARABIDILLO-2 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARABIDILLO-2 (ARABIDILLO-2); FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARABIDILLO-1 (TAIR:AT2G44900.1); Has 10264 Blast hits to 5575 proteins in 291 species: Archae - 0; Bacteria - 64; Metazoa - 4302; Fungi - 778; Plants - 4057; Viruses - 0; Other Eukaryotes - 1063 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:22306806..22310596 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 100751.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.01 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 928 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRRVRQRVE DNGKYKVDSP SYTVIGVEDL APKVQQYVNW TSLPYDTVFH LFTRLNYRDR ASLASTCRTW RSLGASSFLW SSLDLRAHKF DLSMAASLAT 101: RCVDLQKIRF RGVDSADAII HLKARSLLEI SGDYCRKITD ATLSMIAARH EALESLQLGP DFCERITSDA IRVIAFCCPK LKKLRVSGMR DVSSEAIESL 201: AKHCPQLSDL GFLDCLNINE EALGKVVSLR YLSVAGTSNI KWKVALENWE KLPKLIGLDV SRTTIDHIAV SRLLKSSQSL KVLCALNCPY LEEDKSYSSN 301: RFKGKVLLAV FTDTFDELAS IFADNSKKPK NIFSYWRDLI RKDKSIDEIM LWIEWIISHT LLRIAESSNS QGLNDFWLNQ GATLLLSLMQ SAQEDVQERA 401: ATGLATFIVV DDENASIDCG RAEAVMRDGG IRLLLELAKS WREGLQSEAA KAIANLSVNA KVAKAVAEEG GISVLADLAK SMNRLVAEEA AGGLWNLSVG 501: EEHKNAIAQA GGVNALVDLI FRWPHGCDGV LERAAGALAN LAADDKCSME VARAGGVHAL VMLARNCKYE GAQEQAARAL ANLAAHGDSN GNNAAVGQEA 601: GALEALVQLT QSPHEGVKQE AAGALWNLAF DDKNRESIAA FGGVEALVAL AKSSSNASTG LQERVAGALW GLSVSEANSI AIGHEGGIPP LIALVRSEAE 701: DVHETAAGAL WNLSFNPGNA LRIVEEGGVV ALVQLCSSSV SKMARFMAAL ALAYMFDGRM DEYAMIGTSL ESTSKSVTLN GARTMALDQI KAFIKTFMEH 801: QIFSTGALSS APSMLAQVSE RARIPEAGHL RCSGSEIGRF VTMLRNPCLV LRACAAFALL QFTIPESRHA MHHASLMQNA GEARGLRSAA AAASMPREAK 901: IFMKIVLRNL EHQQAESPEG MKVSYNRI |
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)