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AT3G60340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 0.593
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : alpha/beta-Hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: palmitoyl-(protein) hydrolase activity; INVOLVED IN: protein modification process; LOCATED IN: vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Palmitoyl protein thioesterase (InterPro:IPR002472); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT5G47330.1); Has 611 Blast hits to 607 proteins in 157 species: Archae - 0; Bacteria - 0; Metazoa - 315; Fungi - 98; Plants - 140; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G60340-MONOMERBioCyc:ARA:GQT-2606-MONOMEReggNOG:COG1075eggNOG:KOG2541EMBL:AK317387EMBL:AL163852EMBL:AY142494
EMBL:CP002686EnsemblPlants:AT3G60340EnsemblPlants:AT3G60340.1EnsemblPlants:AT3G60340.2entrez:825205ESTHER:arath-At3g60340Gene3D:3.40.50.1820
GeneID:825205GO:GO:0005773GO:GO:0005829GO:GO:0098599Gramene:AT3G60340.1Gramene:AT3G60340.2hmmpanther:PTHR11247
hmmpanther:PTHR11247:SF26InterPro:IPR002472InterPro:IPR029058KEGG:ath:AT3G60340KO:K01074OMA:ATWICIMPfam:PF02089
PhylomeDB:Q9LY31PIR:T49229PRINTS:PR00414Proteomes:UP000006548Reactome:R-ATH-75876RefSeq:NP_191593.1RefSeq:NP_850728.1
SMR:Q9LY31STRING:3702.AT3G60340.1SUPFAM:SSF53474TAIR:AT3G60340TMHMM:TMhelixUniGene:At.48788UniGene:At.63623
UniGene:At.73203UniProt:Q9LY31
Coordinates (TAIR10) chr3:+:22304395..22306389
Molecular Weight (calculated) 37085.70 Da
IEP (calculated) 5.00
GRAVY (calculated) 0.08
Length 338 amino acids
Sequence (TAIR10)
(BLAST)
001: MDFLKATIIV ALICNFASLA SSVPFIVLHG IGDKCSNAGV TQFTELLSDW SGSQGYCLEI GNGSWDSWTM PLLDQTSVVC EKVKSMPELS DGYSIVGLSQ
101: GNMIGRALIE FCDGAPPVKS FVSVAGPHAG TASIPFCGAT WICIMLDSMI KAEIYSDYMQ EHLAPSGFLK IPTDIAGYME GCRFLPKLNN ELPVKNSTYK
201: ERFSSLENLV LIMFEHDTIL IPKETSWFGY YPDGSFKTIL PPQETKLYTE DWIGLRTLDE AGKVKFVNVS GNHLQISHTD MKKHIVPYLC DKSSSSSSTT
301: MAVSGSSSSH QWLPSVGNII MDLIGPEVDQ LQLVLRHV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)