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AT3G60250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.990
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : casein kinase II beta chain 3
Curator
Summary (TAIR10)
Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis
Computational
Description (TAIR10)
casein kinase II beta chain 3 (CKB3); CONTAINS InterPro DOMAIN/s: Casein kinase II, regulatory subunit, alpha-helical (InterPro:IPR016149), Casein kinase II, regulatory subunit, beta-sheet (InterPro:IPR016150), Casein kinase II, regulatory subunit (InterPro:IPR000704); BEST Arabidopsis thaliana protein match is: casein kinase II beta subunit 4 (TAIR:AT2G44680.1); Has 1086 Blast hits to 1084 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 424; Fungi - 285; Plants - 156; Viruses - 0; Other Eukaryotes - 221 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5041eggNOG:KOG3092EMBL:AK229231EMBL:BT024908EnsemblPlants:AT3G60250EnsemblPlants:AT3G60250.1entrez:825196
ExpressionAtlas:Q24JI1Gene3D:1.10.1820.10Gene3D:2.20.25.20GeneID:825196GO:GO:0005956GO:GO:0016301GO:GO:0019887
Gramene:AT3G60250.1hmmpanther:PTHR11740hmmpanther:PTHR11740:SF4InterPro:IPR000704InterPro:IPR016149InterPro:IPR016150OMA:CEDISYP
PANTHER:PTHR11740Pfam:O81275Pfam:PF01214PhylomeDB:O81275PhylomeDB:Q24JI1PRINTS:PR00472PROSITE:PS01101
RefSeq:NP_191584.1scanprosite:PS01101SMART:SM01085SMR:Q24JI1STRING:3702.AT3G60250.1SUPFAM:0047698SUPFAM:SSF57798
TAIR:AT3G60250tair10-symbols:CKB3UniGene:At.23774UniProt:O81275UniProt:Q24JI1
Coordinates (TAIR10) chr3:-:22270714..22271962
Molecular Weight (calculated) 30800.00 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.52
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MYKERSGGGG GGSSRSEILG GAIDRKRIND ALNKKLEKSS TSTTTSRVFS SKDKDPFSFT STKTQLPDVE SETDSEGSDV SGSEGDDTSW ISWFCNLRGN
101: DFFCEVDEDY IQDDFNLCGL SGQVPYYDYA LDLILDVDAS NSEMFTDEQH EMVESAAEML YGLIHVRYIL TTKGMAAMTE KYKNCDFGRC PRVFCCGQSC
201: LPVGQSDIPR SSTVKIYCPK CEDISYPRSK FQGNIDGAYF GTTFPHLFLM TYGNLKPQKP TQSYVPKIFG FKVHKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)