AT3G60140.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycosyl hydrolase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein similar to beta-glucosidase and is a member of glycoside hydrolase family 1. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DARK INDUCIBLE 2 (DIN2); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: aging, response to light stimulus, response to sucrose stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 28 (TAIR:AT2G44460.1); Has 11303 Blast hits to 10947 proteins in 1460 species: Archae - 142; Bacteria - 7771; Metazoa - 714; Fungi - 199; Plants - 1462; Viruses - 0; Other Eukaryotes - 1015 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22216753..22220710 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66923.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.81 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 577 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAKGSWFFII LFIISMLENM INSLELDRHS FPDDFIFGTA ASAFQYEGAT SEGGKSPTIW DHFSLTYPER TKMHNADVAI DFYHRYKDDI KLMKELNMDA 101: FRFSISWSRL IPSGKLKDGV NKEGVQFYKD LIDELLANDI QPSMTLYHWD HPQSLEDEYG GFLSPKIVED FRDFARICFE EFGDKVKMWT TINEPYIMTV 201: AGYDQGNKAA GRCSKWVNEK CQAGDSSTEP YIVSHHTLLA HAAAVEEFRK CEKTSHDGQI GIVLSPRWFE PYHSDSTDDK EAAERALAFE IGWHLDPVIH 301: GDYPEIVKKY AGNKLPSFTV EQSKMLQNSS DFVGINYYTA RFAAHLPHID PEKPRFKTDH HVEWKLTNHS GHIIGPGEER GFLFSHPEGL RKVLNYIKER 401: YNNMPVYIKE NGINDNDDGT KPREEIVKDT FRIEYHKTHF EELHKAIVED GCDVRGYYAW SLMDNFEWEH GYTARFGLYY VDFVNGLKRY PKDSVKWFKR 501: FLKKSVVGES NKEEVEEMSR AEGNKTFKGF EESAGFFASF MAMNQSRRDE ENNRCSFDFP HTHFGVLQGI ENPSSFY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)