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AT3G60100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : citrate synthase 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
citrate synthase 5 (CSY5); FUNCTIONS IN: citrate (SI)-synthase activity, transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer; INVOLVED IN: cellular carbohydrate metabolic process, tricarboxylic acid cycle; LOCATED IN: mitochondrion; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Citrate synthase-like, large alpha subdomain (InterPro:IPR016142), Citrate synthase, eukaryotic (InterPro:IPR010109), Citrate synthase-like (InterPro:IPR002020), Citrate synthase active site (InterPro:IPR019810), Citrate synthase-like, core (InterPro:IPR016141); BEST Arabidopsis thaliana protein match is: Citrate synthase family protein (TAIR:AT2G44350.1); Has 10430 Blast hits to 10424 proteins in 2755 species: Archae - 158; Bacteria - 6931; Metazoa - 258; Fungi - 314; Plants - 178; Viruses - 0; Other Eukaryotes - 2591 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G60100-MONOMEREC:2.3.3.16eggNOG:COG0372eggNOG:KOG2617
EMBL:AL138658EMBL:CP002686EnsemblPlants:AT3G60100EnsemblPlants:AT3G60100.1
entrez:825180Gene3D:1.10.580.10GeneID:825180Genevisible:Q9M1D3
GO:GO:0004108GO:GO:0005739GO:GO:0005759GO:GO:0006099
Gramene:AT3G60100.1gramene_pathway:2.3.3.1gramene_pathway:GLYOXYLATE-BYPASSgramene_pathway:PWY-5690
gramene_pathway:PWY-6549gramene_pathway:PWYQT-4481gramene_plant_reactome:1119533gramene_plant_reactome:6874374
hmmpanther:PTHR11739hmmpanther:PTHR11739:SF8HOGENOM:HOG000130831InParanoid:Q9M1D3
InterPro:IPR002020InterPro:IPR010109InterPro:IPR016142InterPro:IPR019810
KEGG:ath:AT3G60100KO:K01647ncoils:CoilOMA:SYVYRRM
PANTHER:PTHR11739PaxDb:Q9M1D3Pfam:PF00285Pfam:Q9M1D3
PIR:T47834PRIDE:Q9M1D3PRINTS:PR00143PRO:PR:Q9M1D3
PROSITE:PS00480ProteinModelPortal:Q9M1D3Proteomes:UP000006548Reactome:R-ATH-71403
RefSeq:NP_191569.2scanprosite:PS00480SMR:Q9M1D3STRING:3702.AT3G60100.1
SUPFAM:SSF48256TAIR:AT3G60100tair10-symbols:CSY5TIGRfam:TIGR01793
TIGRFAMs:TIGR01793UniGene:At.70776UniPathway:UPA00223UniProt:Q9M1D3
Coordinates (TAIR10) chr3:+:22192888..22196246
Molecular Weight (calculated) 51727.30 Da
IEP (calculated) 6.65
GRAVY (calculated) -0.17
Length 464 amino acids
Sequence (TAIR10)
(BLAST)
001: MVFFRSVSAI SRLRSRAVQQ SSLSNSVRWL HSSELDLKSQ MQEIIPEQQD RLKKLKSEQG KVPVGNITVD MVLGGMRGMT GLLWETSLLD ADEGIRFRGM
101: SIPECQKILP SAESGEEPLP ESLLWLLLTG KVPTKEQANA LSTELAHRAA VPAIDALPST AHPMTQFASG VMALQVQSEF QKAYEQGDIS KSKYWEPTFE
201: DALNLIARVP VVASYVYRRM YKDGSIIPLD DSLDYGANFS HMLGFDSPQM KELMRLYVTI HSDHEGGNVS AHAGHLVGSA LSDPYLSFAA ALNGLAGPLH
301: GLANQEVLLW IKLVVEECGE SISKEQLKDY VWKTLNSGKV VPGYGHGVLR KTDPRYICQR EFALKHLPDD PLFQLVSKLY EVVPPILTEL GKVKNPWPNV
401: DAHSGVLLNY YGLTEARYYT VLFGVSRSLG ICSQLIWDRA LGLPLERPKS VNMDWLDNFT RLNR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)