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AT3G60070.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.861
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G44280.2); Has 1328 Blast hits to 1310 proteins in 435 species: Archae - 0; Bacteria - 1041; Metazoa - 121; Fungi - 3; Plants - 58; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2211eggNOG:KOG4830EMBL:AY123977EMBL:CP002686EnsemblPlants:AT3G60070EnsemblPlants:AT3G60070.1entrez:825177
GeneID:825177GO:GO:0016021Gramene:AT3G60070.1hmmpanther:PTHR11328hmmpanther:PTHR11328:SF34HOGENOM:HOG000239767InterPro:IPR020846
KEGG:ath:AT3G60070OMA:TFFMELEPfam:PF13347PhylomeDB:Q8L7Z7Proteomes:UP000006548RefSeq:NP_191566.5STRING:3702.AT3G60070.1
SUPFAM:SSF103473TAIR:AT3G60070TMHMM:TMhelixUniGene:At.1176UniProt:Q8L7Z7
Coordinates (TAIR10) chr3:-:22183572..22185941
Molecular Weight (calculated) 50336.00 Da
IEP (calculated) 7.81
GRAVY (calculated) 0.64
Length 458 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGGSEEDPF TKPIGRWSVF FYGVGHMLND ITASCWFTYL LLFLTQIGLS PRDAAIVMLS GQVADAFATI FTGELIDRFG HFKIWHAAGS LLVAISFSSV
101: FGGCLPCSIL HNDSLTLETF SYSMFAAIFN IGWAATQVSH MAMVNCISLN STSRVALTSS RNAFTMVANL GLYAIALVVF GVIKAGSKED TETQYRWIAY
201: SSITIGCCFV VIFLMGTKEP RLRIDLKETS RARIPWVYWF RKILYYQVAM VYLLTRLVLN VSQAYLAFFV IDDLQMDQSA KALVPAIIYI CSFVVSVLLQ
301: EIPWNGKRLK AYYTAGGIIW IFCGAAILLL PRDISSFMYA ISVFIGIANA LMMVTAISMQ SVLVGAEVGG CAFVCGSLSF LDKMSCGLAL YVLQSHQTTS
401: PRGQLNNNQQ SVYLSVTRYG LGLVPALCSF VGVAVTFFME LEAAGSLSKP LLREPLLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)