AT3G60070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.959 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Major facilitator superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G44280.2); Has 1328 Blast hits to 1310 proteins in 435 species: Archae - 0; Bacteria - 1041; Metazoa - 121; Fungi - 3; Plants - 58; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22183572..22185941 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50336.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.64 | ||||||||||||||||||||||||||||
| Length | 458 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGGSEEDPF TKPIGRWSVF FYGVGHMLND ITASCWFTYL LLFLTQIGLS PRDAAIVMLS GQVADAFATI FTGELIDRFG HFKIWHAAGS LLVAISFSSV 101: FGGCLPCSIL HNDSLTLETF SYSMFAAIFN IGWAATQVSH MAMVNCISLN STSRVALTSS RNAFTMVANL GLYAIALVVF GVIKAGSKED TETQYRWIAY 201: SSITIGCCFV VIFLMGTKEP RLRIDLKETS RARIPWVYWF RKILYYQVAM VYLLTRLVLN VSQAYLAFFV IDDLQMDQSA KALVPAIIYI CSFVVSVLLQ 301: EIPWNGKRLK AYYTAGGIIW IFCGAAILLL PRDISSFMYA ISVFIGIANA LMMVTAISMQ SVLVGAEVGG CAFVCGSLSF LDKMSCGLAL YVLQSHQTTS 401: PRGQLNNNQQ SVYLSVTRYG LGLVPALCSF VGVAVTFFME LEAAGSLSKP LLREPLLE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)