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AT3G59980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleic acid-binding, OB-fold-like protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleic acid-binding, OB-fold-like protein; FUNCTIONS IN: tRNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), tRNA-binding domain (InterPro:IPR002547); BEST Arabidopsis thaliana protein match is: methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative (TAIR:AT4G13780.1); Has 5867 Blast hits to 5867 proteins in 2108 species: Archae - 266; Bacteria - 4355; Metazoa - 277; Fungi - 157; Plants - 151; Viruses - 0; Other Eukaryotes - 661 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0073eggNOG:KOG2241EMBL:AL138647EMBL:AY045920EMBL:AY086812EMBL:AY113866EMBL:CP002686
EnsemblPlants:AT3G59980EnsemblPlants:AT3G59980.1entrez:825168Gene3D:2.40.50.140GeneID:825168GO:GO:0000049GO:GO:0009507
Gramene:AT3G59980.1hmmpanther:PTHR11586hmmpanther:PTHR11586:SF18HOGENOM:HOG000153226InterPro:IPR002547InterPro:IPR012340KEGG:ath:AT3G59980
OMA:WQHEEADPfam:PF01588Pfscan:PS50886PhylomeDB:Q9M1X8PIR:T47822PROSITE:PS50886Proteomes:UP000006548
RefSeq:NP_191557.1SMR:Q9M1X8STRING:3702.AT3G59980.1SUPFAM:SSF50249SwissPalm:Q9M1X8TAIR:AT3G59980UniGene:At.1168
UniGene:At.72842UniProt:Q9M1X8
Coordinates (TAIR10) chr3:-:22154528..22155570
Molecular Weight (calculated) 29746.70 Da
IEP (calculated) 8.07
GRAVY (calculated) -0.25
Length 273 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATIAVFTG GLKVKAGVLA VQISSLPLRR EFPRYLSSSS RRTVAAISSS LRVSAVYNHQ QRNRSSWPRV ATFCTAAPDA GTTVSADESE KKSESQKEEE
101: NVKETANLLD IKVGRIVKAW QHEEADSLYV EEVDIGEAEP RIICSGLVKY VPLDLLQGAS VVVLANLKPR NMRGVKSCGM LLAASDAAHE NVELLVPPEG
201: SVPGDRVWFG NEEDLEQLPE PAPPNKVQKK KMWELVQPLL KTDASGVSML KEHLMRTSSG LVTSKSLRNA NIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)