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AT3G59920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.500
cytosol 0.500
ASURE: cytosol,extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21798375 (2011): extracellular region
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RAB GDP dissociation inhibitor 2
Curator
Summary (TAIR10)
RAB GDP DISSOCIATION INHIBITOR 2
Computational
Description (TAIR10)
RAB GDP dissociation inhibitor 2 (GDI2); FUNCTIONS IN: RAB GDP-dissociation inhibitor activity; INVOLVED IN: regulation of GTPase activity, protein transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: guanosine nucleotide diphosphate dissociation inhibitor 1 (TAIR:AT2G44100.1); Has 1316 Blast hits to 1212 proteins in 257 species: Archae - 2; Bacteria - 2; Metazoa - 653; Fungi - 287; Plants - 181; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Protein Annotations
BioGrid:10476eggNOG:COG5044eggNOG:KOG1439EMBL:AB005560EMBL:AJ001397EMBL:AL138647EMBL:AY081269
EMBL:BT000011EMBL:CP002686EnsemblPlants:AT3G59920EnsemblPlants:AT3G59920.1entrez:825162Gene3D:3.50.50.60GeneID:825162
Genevisible:O24653GO:GO:0005093GO:GO:0005096GO:GO:0005829GO:GO:0009506GO:GO:0015031GO:GO:0016491
GO:GO:0048046GO:GO:0050790Gramene:AT3G59920.1hmmpanther:PTHR11787hmmpanther:PTHR11787:SF10HOGENOM:HOG000163825InParanoid:O24653
IntAct:O24653InterPro:IPR000806InterPro:IPR018203InterPro:IPR023753iPTMnet:O24653KEGG:ath:AT3G59920KO:K17255
OMA:MAVETIHPaxDb:O24653Pfam:O24653Pfam:PF00996PhylomeDB:O24653PIR:T47816PRIDE:O24653
PRINTS:PR00891PRINTS:PR00892PRO:PR:O24653ProteinModelPortal:O24653Proteomes:UP000006548Reactome:R-ATH-194840RefSeq:NP_191551.1
SMR:O24653STRING:3702.AT3G59920.1SUPFAM:SSF51905TAIR:AT3G59920tair10-symbols:ATGDI2tair10-symbols:GDI2UniGene:At.23961
UniProt:O24653
Coordinates (TAIR10) chr3:+:22135157..22138221
Molecular Weight (calculated) 49541.20 Da
IEP (calculated) 5.48
GRAVY (calculated) -0.29
Length 444 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)