AT3G59845.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.989 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc-binding dehydrogenase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G17000.1); Has 16333 Blast hits to 16305 proteins in 1827 species: Archae - 109; Bacteria - 9318; Metazoa - 826; Fungi - 1128; Plants - 582; Viruses - 0; Other Eukaryotes - 4370 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:22106421..22107785 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38058.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.94 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 346 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METTVKNKQV ILRNYVKGIP KESDLMIITA SDPVELKVKP GSAAVMVRNL YLSCDPYMGI LMREPTPSTL ALLDAFIPGK PIAGIGVSQV IDSDDPSFTK 101: GDMIWGIVNW EEFSTINPAA IFKIDVNINV PLSYYTGILG MIGLTAYAGF FEICSPKKGD TVFVSAASGA VGQLVGQFAK LMGCYVVGSA GSKQKVDLLL 201: NKFGYDDAFN YKEEPDLDSA LKRCVPKGID IYFENVGGKM LDAVLLNMKT YGRIAVCGMI SQYHLETRDR LQNLPDIIFK KIRMQGFASY DFIDRFPKFL 301: EFVLPYIKEE KLAYVEDIVE GLENGPAALV GLLHGKNVGK QVLKVA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)