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AT3G59810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.696
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Small nuclear ribonucleoprotein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G43810.2); Has 1159 Blast hits to 1159 proteins in 301 species: Archae - 313; Bacteria - 0; Metazoa - 297; Fungi - 260; Plants - 135; Viruses - 0; Other Eukaryotes - 154 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1958eggNOG:KOG1783EMBL:AL138647EMBL:AY086430
EMBL:BT002850EMBL:BT004433EMBL:CP002686EnsemblPlants:AT3G59810
EnsemblPlants:AT3G59810.1entrez:825150GeneID:825150Genevisible:Q9M1Z3
GO:GO:0000398GO:GO:0000932GO:GO:0003723GO:GO:0005681
GO:GO:0005688GO:GO:0005730GO:GO:0005732GO:GO:0030490
GO:GO:0046540Gramene:AT3G59810.1hmmpanther:PTHR11021hmmpanther:PTHR11021:SF5
HOGENOM:HOG000223542InParanoid:Q9M1Z3IntAct:Q9M1Z3InterPro:IPR001163
InterPro:IPR010920iPTMnet:Q9M1Z3KEGG:ath:AT3G59810KO:K12625
OMA:ERCREVSPaxDb:Q9M1Z3Pfam:PF01423Pfam:Q9M1Z3
PhylomeDB:Q9M1Z3PIR:T47805PRIDE:Q9M1Z3PRO:PR:Q9M1Z3
ProMEX:Q9M1Z3ProteinModelPortal:Q9M1Z3Proteomes:UP000006548Reactome:R-ATH-430039
Reactome:R-ATH-72163RefSeq:NP_191540.1SMART:SM00651SMR:Q9M1Z3
STRING:3702.AT3G59810.1SUPFAM:SSF50182TAIR:AT3G59810UniGene:At.34551
UniProt:Q9M1Z3
Coordinates (TAIR10) chr3:+:22096841..22097666
Molecular Weight (calculated) 9913.86 Da
IEP (calculated) 6.62
GRAVY (calculated) -0.26
Length 91 amino acids
Sequence (TAIR10)
(BLAST)
1: MSGVEEKVSG TTKTPADFLK SIRGRPVVVK LNSGVDYRGT LTCLDGYMNI AMEQTEEYVN GQLKNKYGDA FIRGNNVLYI STVNMTVADG A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)