AT3G59690.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : IQ-domain 13 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
IQ-domain 13 (IQD13); FUNCTIONS IN: calmodulin binding; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 14 (TAIR:AT2G43680.1); Has 1694 Blast hits to 1201 proteins in 100 species: Archae - 0; Bacteria - 16; Metazoa - 93; Fungi - 40; Plants - 1224; Viruses - 44; Other Eukaryotes - 277 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:22049572..22051479 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58508.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 11.52 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||
| Length | 517 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKKGSWFSA IKRVFTPHSK EKQLSNNNQE PEIKSENKEK KKKGFGKKLR NGETNSFLPI FRQPSSIEKI LSEAEREHNL VFRPPTPTDR ANSSSTSVAS 101: PLVRPASPKV PSQRYVSSPK PISPRVAYPQ VHYPKPPSPK PPSPRAVSPR IVQRREFVHR PEPSLLVKNA YAIKIQAAFR GYMARRSFRA LKGLVRLQGV 201: VRGHSVKRQT MNAMKYMQLL VRVQTQVQSR RIQMLENRAR NDKDDTKLVS SRMSDDWDDS VLTKEEKDVR LHRKIDAMIK RERSMAYAYS HQLWKNSPKS 301: AQDIRTSGFP LWWNWVDRQK NQNQPFRLTP TRPSLSPQPQ SSNQNHFRLN NSFDTSTPNS SKSTFVTPSR PIHTPQPYSS SVSRYSRGGG RATQDSPFKD 401: DDSLTSCPPF SAPSYMAPTV SAKAKLRANS NPKERMDRTP VSTNEKRRSS FPLGSFKWNK GSLFMSNNSN NKGPGSSSSG AVVLEKHKTL KSVGNLSIDS 501: TVSMPATIGR RAFNRFA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)