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AT3G59610.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.765
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein / jacalin lectin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein / jacalin lectin family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), Mannose-binding lectin (InterPro:IPR001229), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT3G59590.1); Has 2196 Blast hits to 1799 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 2192; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JW8NeggNOG:ENOG411055TEMBL:AL138659EMBL:CP002686
EnsemblPlants:AT3G59610EnsemblPlants:AT3G59610.1entrez:825130Gene3D:2.100.10.30
GeneID:825130Genevisible:Q9M1A7GO:GO:0030246Gramene:AT3G59610.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127HOGENOM:HOG000112505InParanoid:Q9M1A7
InterPro:IPR001229InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451
KEGG:ath:AT3G59610OMA:NTRNIEIPaxDb:Q9M1A7Pfam:PF00646
Pfam:PF01419Pfam:PF07734Pfam:Q9M1A7Pfscan:PS50181
Pfscan:PS51752PhylomeDB:Q9M1A7PIR:T49302PRIDE:Q9M1A7
PRO:PR:Q9M1A7PROSITE:PS50181PROSITE:PS51752ProteinModelPortal:Q9M1A7
Proteomes:UP000006548RefSeq:NP_191520.1SMART:SM00256SMART:SM00915
SMR:Q9M1A7SUPFAM:SSF51101SUPFAM:SSF81383TAIR:AT3G59610
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.23114UniProt:Q9M1A7
Coordinates (TAIR10) chr3:+:22019553..22021199
Molecular Weight (calculated) 59917.00 Da
IEP (calculated) 6.36
GRAVY (calculated) -0.27
Length 521 amino acids
Sequence (TAIR10)
(BLAST)
001: MMQPDHDLPY DLEGEILSHL PIQILARFRC VCKRWNTLFK ERRFFNSDLG LARPQFILLA ESKICSVDVN LDGPSIEVHN LPSDIPGYKL YMPMHVEYCD
101: GLFLYATCYG IGICNPWLRQ IRWFKSSYEG YDFSGMGYDN SRQDKHYKIL GSYCTNTTMN ASVTELGSDA WKSYEFAFHS WNLSMSPYSV SLNGNLYWVA
201: YNHESRDYFI QSFDFSTVSF KHYCILPTKN GHRQCDGRSL AIFREDRFSF LEQEIYNTRN IEIWVTKETI KNGDGEAVEW VNLMSVLVPE WSSLSVNYYP
301: PSYFVDEDKV GLTLVICCYN KEGKAYIYIA KGDKFHEIEI KDLVEYNPRH RTYFPNLIQV PTFTMSGRSI TQHQVESRFA PLRGIQVSVG VGGDEWDDGF
401: FDNVKEIIIH TNSLGIIFVK FYYRNGNVRV AGAAHGDSTE TRGLMVPDDD YIEAVQGTYT ESHITSMAFR LHKGNRSLRF GFFEGMSFVL GGARGSKIIG
501: FYGRSSDLYL TAFGVHFSPL P
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)