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AT3G59580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant regulator RWP-RK family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant regulator RWP-RK family protein; CONTAINS InterPro DOMAIN/s: Octicosapeptide/Phox/Bem1p (InterPro:IPR000270), Plant regulator RWP-RK (InterPro:IPR003035); BEST Arabidopsis thaliana protein match is: Plant regulator RWP-RK family protein (TAIR:AT2G43500.2); Has 701 Blast hits to 585 proteins in 46 species: Archae - 0; Bacteria - 15; Metazoa - 3; Fungi - 0; Plants - 625; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKM4eggNOG:ENOG410YA7WEMBL:AK220674EMBL:AL138659EMBL:BT010459EMBL:CP002686EnsemblPlants:AT3G59580
EnsemblPlants:AT3G59580.1EnsemblPlants:AT3G59580.2entrez:825127GeneID:825127Genevisible:Q9M1B0GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351Gramene:AT3G59580.1Gramene:AT3G59580.2hmmpanther:PTHR32002hmmpanther:PTHR32002:SF7HOGENOM:HOG000237689
InParanoid:Q9M1B0InterPro:IPR000270InterPro:IPR003035KEGG:ath:AT3G59580OMA:PRRQYLSPaxDb:Q9M1B0Pfam:PF00564
Pfam:PF02042Pfam:Q9M1B0Pfscan:PS51519Pfscan:PS51745PhylomeDB:Q9M1B0PIR:T49299PRIDE:Q9M1B0
PRO:PR:Q9M1B0PROSITE:PS51519PROSITE:PS51745ProteinModelPortal:Q9M1B0Proteomes:UP000006548RefSeq:NP_001030895.1RefSeq:NP_191517.1
SMART:SM00666SUPFAM:SSF54277TAIR:AT3G59580UniGene:At.34613UniProt:Q9M1B0
Coordinates (TAIR10) chr3:+:22009652..22012721
Molecular Weight (calculated) 98718.30 Da
IEP (calculated) 5.29
GRAVY (calculated) -0.38
Length 894 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPSASRDN KGFCFPDIPV EEMDGWVKNL ISEEDMFSSS STSELMNFES FASWCNSPSA ADILFTQYGL STSQSIIPFG GLEGSYACEK RPLDCTSVPR
101: SLSHSLDEKM LKALSLFMEF SGEGILAQFW TPIKTGDQYM LSTCDQAYLL DSRLSGYREA SRRFTFSAEA NQCSYPGLPG RVFISGVPEW TSNVMYYKTA
201: EYLRMKHALD NEVRGSIAIP VLEASGSSCC AVLELVTCRE KPNFDVEMNS VCRALQAVNL QTSTIPRRQY LSSNQKEALA EIRDVLRAVC YAHRLPLALA
301: WIPCSYSKGA NDELVKVYGK NSKECSLLCI EETSCYVNDM EMEGFVNACL EHYLREGQGI VGKALISNKP SFSSDVKTFD ICEYPLVQHA RKFGLNAAVA
401: TKLRSTFTGD NDYILEFFLP VSMKGSSEQQ LLLDSLSGTM QRLCRTLKTV SDAESIDGTE FGSRSVEMTN LPQATVSVGS FHTTFLDTDV NSTRSTFSNI
501: SSNKRNEMAG SQGTLQQEIS GARRLEKKKS STEKNVSLNV LQQYFSGSLK DAAKSLGVCP TTLKRICRQH GIMRWPSRKI NKVNRSLRKI QTVLDSVQGV
601: EGGLKFDSVT GEFVAVGPFI QEFGTQKSLS SHDEDALARS QGDMDEDVSV EPLEVKSHDG GGVKLEEDVE TNHQAGPGSL KKPWTWISKQ SGLIYSDDTD
701: IGKRSEEVNK DKEDLCVRRC LSSVALAGDG MNTRIERGNG TVEPNHSISS SMSDSSNSSG AVLLGSSSAS LEQNWNQIRT HNNSGESGSS STLTVKATYR
801: EDTVRFKLDP YVVGCSQLYR EVAKRFKLQE GAFQLKYLDD EEEWVMLVTD SDLHECFEIL NGMRKHTVKF LVRDIPNTAM GSSAGSNGYL GTGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)