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AT3G59430.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 10 growth stages; Has 332 Blast hits to 125 proteins in 52 species: Archae - 0; Bacteria - 61; Metazoa - 17; Fungi - 14; Plants - 37; Viruses - 2; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSVGeggNOG:ENOG410ZCW7EMBL:AL356014EMBL:BT022020
EMBL:BT023746EMBL:CP002686EnsemblPlants:AT3G59430EnsemblPlants:AT3G59430.1
EnsemblPlants:AT3G59430.2entrez:825112ExpressionAtlas:Q9LX28GeneID:825112
Gramene:AT3G59430.1Gramene:AT3G59430.2hmmpanther:PTHR36376hmmpanther:PTHR36376:SF1
HOGENOM:HOG000130014OMA:FNPSDWIPhylomeDB:Q9LX28PIR:T49011
Proteomes:UP000006548RefSeq:NP_191502.1RefSeq:NP_974461.1TAIR:AT3G59430
UniGene:At.34631UniGene:At.67523UniProt:Q9LX28
Coordinates (TAIR10) chr3:-:21964484..21966497
Molecular Weight (calculated) 49483.00 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.82
Length 451 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRKEDVDFY CGFSRKELQS LCKKYNLPAN RSSSDMAESL ASYFEKNNLN PVSFGVPGNQ DSSATTSRAP AIRTWNVKRD SYGNKLDVPR EDYVQGAVAR
101: EPGIILGNNT PYQERNGNDG LIDFTSAPPY MRKLNEKGPT ANSKRADSRL ENRMRDVDSG DNPSSSSFEF HVSLEEGISL SVDLNFNPSD WINSMRDEVN
201: VCDSMRRRKS PHSDLGITEC KKQKSSGQDT DGHVRRESSL SPPMKDNAHL PSDHHPNGER SLASSAIEPC NRIKESSDTC KEKSGLNLSI PDSSGPCQIA
301: SSCVESYSKS CCVNPVDLDC IIPPGKKLAS ESDMVAAEQN HSAGDLLVEI PKNPSMESFQ IVGNSSTVIC PRGAGSELSS SEAEAYHSNQ PCSPRKTSRS
401: STISSPEFII DRESTSYSES FKFRCNGGKS LPPNTEEQEK SEVLSEQARS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)